ZRdb KZFP & Repeats
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LTR_MER68-INT

  • Name
    MER68-INT
  • Repbase
    MER68_I
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000914
Description :

MER68-int is updated and renamed from HERVL68. Note that MER stands forMEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gttggtgtcagaagtgggattcgctagaacgaccctgactcactgaaatatggcgaaagcnttgtttgggaaaaaggaagaatgaaggggnggggatgacgaanctttgatgcctgggtggctacggagtcacccatggtatgaaacagcagctgagctgctgtctgttgtgagaggtaaaagttaccnacggaatttgaaaatgatagatccaaccccaggagagttggctcgctggatcccctggccgcttttggccgcgctggctaaagtgagggggaaaagcgcagcccgggtgacgcctttggtttttgttctctcctccaggcgggaggagaaagggcccaaacgttcccaaaggtgagctttgggtgggccaaaaatgttaaaagtttgcgttgctctctcctccaagtgggaggaaaaaggttaaatcagttcccagggctggagcaaagctttagataaaccagaggaggagaaaaagtggggaggggcggccgaaaccactccagcctttcttcagcccagctgctgcngcagctgcncaaccccctcccttcccngcancctncatccccggcagctgtaatgttaaccctgtaaatgctgaatttactgctaggggtttgagtaaacttgcaatgagaaaaaaaaaggaaatttaaaatggctttgtgttttgtggctattgcatctggatgtatgataaaaattgatgtaaaatgttatatgcttgtaatttcataaatgctagagggatcatcccgatcgggaaagctgcaaagaaaaantgttagtgggancacaacttccttgctttttgccgccggtgggcggattggaatttaaactctttgagtattagaaacagaacaagtctccgtaactgatgatttttgctatgatttttgcctattggagcctctggaaaaagggagacaacatgaaaagagaggcaatctccagatggagatacgcttttggagttttaaaaagcagtttttagtttgctaatgagctctcgntgaaatcagatgtctgacccttagaggctgatgattttccggcctgatgtgcatnatttttgagtgggtcaatttggactctaagactgacaagataaaaagggcttaggaaagccttgcttgtcacttggacttggaacacagctgtctggccctgcagcatctcggctttgctgctgccgaagaaaagccnctggcttttttggaatcctgaattcacagatcctaattgcctggacctgactctaagctgaaacctgatactgtctgctncgggctgtttcagcctcagcacgagctgtgctgaactgaaagcaggcatagctccgctcaatgaacaggactcngactctgggaccgttgcagatttaggacacccctctgtggggccntaaactatgaaaacatcatggatgctggctggaccgtctgggtcacntgcagatgcccacgggaaagggcttgttctctgatgggaccatctgaaatcgagctgctgatcggctctgtatttctgatacagagactgattgcattcctaacttgtgattcctgccgaaagctgcaagttgggggagggcacatcacagggantgtgacccctccgcccactcctgacagatcggactctngaccccctctcggggatgtctcactgctgttgacttgttgttcggctttccggattagttgcagtttgcaacagtggactgacagcctgactctacttccctcacctttctcctggtacacacaccttagtaaggcagtttgattattaaatgcagctgtccccagaaagggattgatcttttntnctaggctgctcactggataaatgatcgggacgaaaggggtgggaaggttatgtaaacccattttgaaaatttttgaaaattcaggatttcgtcctgaccaattcctgaacatgatgtgtctttctggttaagttgtataaaaatgtttttctgtgaaaatgcttttgtccctcttgcatacgacccttccagacgaaaggtctgggtgagagtaggggatgattgaaaaaatgtaaagttntgattactgaatgggacacgctgattttgtaacaacggagaaaaaacaaaancctggcacctggggaggcacggggagagggagagggcattaatgatctttgtttttcagaactgctcctggaagctttcccctcttcctgaagaaaaactccccgtgctgcctttccaagctgctgcgagcgctttgaattcaaactgactgctgagcctacgatcacacctgacagcgctgactatgagacagcagggggtggccccagctcctgcacnttccacgcagaacacctccagatgtcgtccacactcgtgaggcggatgaactggtgtcacggacaagcaaaactgtttggaactgactgcctcaggcagtccctctgaaaccaaggactnaactgaattattcggactggactgggaaccctagggcgggaggccccacggtgggaggccacactgggggccctgttaacctgtnctgcctgactaatgtatgtcctgcttggggtgccctaacaattgtaaactctttgtttccaggggtaccacgtgtgccctctgggattgtacttcttgtgtgtgtaccctgactatcatgacactgcctcagccctggaaggcattcaggtcagcttcaacttactggccagagttgtgctgtgcctgaattgatgcctcgggccagaaaaaaaaaggttaatacagaaacttaaggagaaagccacctggctttctaaggtagaccttnatggttnatgggatttgttttagctggctaagtccgggacccctggagggcatggctgaggtcaatactgcaggttggtctcaccctgctgcntggggtcctactgataataattttgctgtaaagacgccttggccaagggccaagggggtggac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 26 99.0 Highly correlated
2 ZIM3 5 87.0 Moderately correlated
3 ZNF479 5 6.4 Weakly correlated
4 ZFP69B 4 99.0 Highly correlated
5 ZNF705B 4 28.9 Weakly correlated
6 ZNF101 4 43.0 Weakly correlated
7 ZFP57 3 87.0 Moderately correlated
8 ZNF707 3 74.0 Weakly correlated
9 ZNF701 3 28.9 Weakly correlated
10 ZNF680 3 28.9 Weakly correlated
11 ZNF610 3 28.9 Weakly correlated
12 ZNF263 3 180.0 Weakly correlated
13 ZNF182 3 99.0 Highly correlated
14 ZNF257 2 0.0 Weakly correlated
15 ZNF554 2 99.0 Highly correlated
16 ZNF766 2 43.0 Weakly correlated
17 ZNF2 2 99.0 Highly correlated
18 ZNF534 2 19.6 Weakly correlated
19 ZNF324 2 99.0 Highly correlated
20 ZFP37 2 99.0 Highly correlated
21 ZNF679 2 28.9 Weakly correlated
22 ZNF394 2 99.0 Highly correlated
23 ZNF135 2 94.0 Moderately correlated
24 ZNF133 1 99.0 Highly correlated
25 ZNF84 1 99.0 Highly correlated
26 ZNF671 1 94.0 Moderately correlated
27 ZNF100 1 28.9 Weakly correlated
28 ZNF700 1 28.9 Weakly correlated
29 ZKSCAN1 1 160.0 Weakly correlated
30 ZFP69 1 99.0 Highly correlated
31 ZNF75D 1 94.0 Moderately correlated
32 ZNF765 1 8.6 Weakly correlated
33 ZNF789 1 99.0 Highly correlated
34 ZNF793 1 99.0 Highly correlated
35 ZNF597 1 94.0 Moderately correlated
36 ZNF558 1 99.0 Highly correlated
37 ZNF547 1 74.0 Weakly correlated
38 ZNF530 1 28.9 Weakly correlated
39 ZNF528 1 43.0 Weakly correlated
40 ZNF519 1 19.6 Weakly correlated
41 ZNF169 1 94.0 Moderately correlated
42 ZNF350 1 99.0 Highly correlated
43 ZNF331 1 94.0 Moderately correlated
44 ZNF317 1 99.0 Highly correlated
45 ZNF30 1 94.0 Moderately correlated
46 ZNF284 1 43.0 Weakly correlated
47 ZNF273 1 28.9 Weakly correlated
48 ZNF175 1 94.0 Moderately correlated
49 ZNF251 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 4 87.0 Moderately correlated
2 ZNF707 2 74.0 Weakly correlated
3 ZNF534 2 19.6 Weakly correlated
4 ZNF479 2 6.4 Weakly correlated
5 ZNF705B 2 28.9 Weakly correlated
6 ZNF257 2 0.0 Weakly correlated
7 ZNF766 1 43.0 Weakly correlated
8 ZNF75D 1 94.0 Moderately correlated
9 ZNF530 1 28.9 Weakly correlated
10 ZFP57 1 87.0 Moderately correlated
11 ZNF133 1 99.0 Highly correlated
12 ZNF169 1 94.0 Moderately correlated
13 ZNF671 1 94.0 Moderately correlated
14 ZNF610 1 28.9 Weakly correlated
15 ZNF789 1 99.0 Highly correlated
16 ZNF101 1 43.0 Weakly correlated
17 ZNF765 1 8.6 Weakly correlated
18 ZNF701 1 28.9 Weakly correlated
19 ZFP69 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats