ZRdb KZFP & Repeats
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LTR_MER67D

  • Name
    MER67D
  • Repbase
    MER67D
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000910
Description :

MER67D is an LTR for a MER4-int type ERV with distant similarity toMER31B. This has 4bp TSDs. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaccaagacggccttaacgttcccctcagcttgactaaactttagacaggtttcttcctgactntaggcccctgacctcccttttcttagagcatttactttagaaaacttgcaattgtaaattctttctctgcccctttgagatgtaaatcttctacaacccaggaatgtctttctcaaggacctgggagccatccctttgaaatgtaatcatcgaaggagatagcgcccctatctcccagtctctgtgggagggtaggagcctaacttcgataagcgccaattagcaaacacagatggcctaatcacattgaccaacctccccnctaacgtcctccagtacttttccactagctcaccccagcgcttaaaaaccctcccgccttttgtttcagcggagttgagttcaatctctnncccctattncaatagtctctntcccctattgcaatagtcttgaataaagtcttccttgcctgtttaacntntgtccggtgcaatttttctttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 83 28.9 Weakly correlated
2 ZNF169 54 94.0 Moderately correlated
3 ZNF382 22 99.0 Highly correlated
4 ZNF274 13 99.0 Highly correlated
5 ZNF394 9 99.0 Highly correlated
6 ZNF534 9 19.6 Weakly correlated
7 ZNF263 8 180.0 Weakly correlated
8 ZFP37 6 99.0 Highly correlated
9 ZNF479 6 6.4 Weakly correlated
10 ZNF723 6 15.2 Weakly correlated
11 ZNF766 6 43.0 Weakly correlated
12 ZNF251 5 94.0 Moderately correlated
13 ZNF2 5 99.0 Highly correlated
14 ZNF705B 4 28.9 Weakly correlated
15 ZNF558 4 99.0 Highly correlated
16 ZNF707 4 74.0 Weakly correlated
17 ZNF701 3 28.9 Weakly correlated
18 ZNF679 3 28.9 Weakly correlated
19 ZNF610 3 28.9 Weakly correlated
20 ZNF705D 3 28.9 Weakly correlated
21 ZNF425 3 94.0 Moderately correlated
22 ZNF101 3 43.0 Weakly correlated
23 ZNF324 3 99.0 Highly correlated
24 ZNF320 2 28.9 Weakly correlated
25 ZNF486 2 8.6 Weakly correlated
26 ZNF506 2 28.9 Weakly correlated
27 ZFP69B 2 99.0 Highly correlated
28 ZNF75D 2 94.0 Moderately correlated
29 ZIM3 2 87.0 Moderately correlated
30 ZKSCAN8 2 160.0 Weakly correlated
31 ZNF202 1 160.0 Weakly correlated
32 ZNF84 1 99.0 Highly correlated
33 ZNF793 1 99.0 Highly correlated
34 ZNF140 1 99.0 Highly correlated
35 ZNF17 1 69.0 Weakly correlated
36 ZNF182 1 99.0 Highly correlated
37 ZNF18 1 160.0 Weakly correlated
38 ZNF584 1 99.0 Highly correlated
39 ZNF569 1 99.0 Highly correlated
40 ZNF264 1 99.0 Highly correlated
41 ZNF304 1 99.0 Highly correlated
42 ZNF519 1 19.6 Weakly correlated
43 ZNF485 1 94.0 Moderately correlated
44 ZFP30 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 45 28.9 Weakly correlated
2 ZNF534 7 19.6 Weakly correlated
3 ZNF263 5 180.0 Weakly correlated
4 ZNF723 3 15.2 Weakly correlated
5 ZNF479 3 6.4 Weakly correlated
6 ZFP37 1 99.0 Highly correlated
7 ZKSCAN8 1 160.0 Weakly correlated
8 ZNF274 1 99.0 Highly correlated
9 ZNF75D 1 94.0 Moderately correlated
10 ZNF169 1 94.0 Moderately correlated
11 ZNF705B 1 28.9 Weakly correlated
12 ZNF705D 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF534 19.6 Weakly correlated