ZRdb KZFP & Repeats
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LTR_MER67C

  • Name
    MER67C
  • Repbase
    MER67C
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000909
Description :

MER67C is an LTR for a MER4-int type ERV with distant similarity toLTR70. It has 4 bp TSDs and is found in humans and rodents. Note thatMER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaagggcaaatacaaattaaaaataagaggcttaattctccctgttgaaaataagggaaagagacttccctccctcccttttcttagagcatttactttagaaaacttgtaattgtaaattctttctctgtctctttgaaatgtatgtaaatctttttaaaagctaaataagcctcttgccagctttacgacccaggaatgtctttctcaaggacctgggagccatctctttgaaatgtaancatcaaggaagatagcgcccctatctcccagtttctgtgggagggtaggagcctaacttcggtgggcgccttgctccaagttgcaaaactacctcctgtcataaagatatgagaagtttatttttcctttggataaagccaattagcnaacacagatggtcaccccaattaccaggtgaatttaggatgaactatgtgtgacaaatggtgctgtcaagtcctcttacttgaggactagttattgtttatcttgagaacatgtatgtaatgggttgtatctgcttggctatataaaagggtgagatttctttctgtctttgcaatctcttagcggattgcctgtgatgcgcatcacattctggtttaatgcttattcaataataaaactgttttctttctcttctacctttgtggagaggttttctgggttgggaggagattttgtttttaattatatttccccaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 42 99.0 Highly correlated
2 ZNF766 29 43.0 Weakly correlated
3 ZNF394 27 99.0 Highly correlated
4 ZNF680 25 28.9 Weakly correlated
5 ZNF169 24 94.0 Moderately correlated
6 ZNF263 22 180.0 Weakly correlated
7 ZNF274 15 99.0 Highly correlated
8 ZNF18 11 160.0 Weakly correlated
9 ZNF175 10 94.0 Moderately correlated
10 ZNF101 10 43.0 Weakly correlated
11 ZNF324 9 99.0 Highly correlated
12 ZFP37 9 99.0 Highly correlated
13 ZNF2 8 99.0 Highly correlated
14 ZNF610 8 28.9 Weakly correlated
15 ZNF723 8 15.2 Weakly correlated
16 ZNF534 7 19.6 Weakly correlated
17 ZNF251 6 94.0 Moderately correlated
18 ZNF701 6 28.9 Weakly correlated
19 ZNF589 6 28.9 Weakly correlated
20 ZFP69B 6 99.0 Highly correlated
21 ZNF479 6 6.4 Weakly correlated
22 ZIM3 6 87.0 Moderately correlated
23 ZNF197 6 99.0 Highly correlated
24 ZNF584 6 99.0 Highly correlated
25 ZKSCAN8 6 160.0 Weakly correlated
26 ZNF549 5 87.0 Moderately correlated
27 ZNF679 5 28.9 Weakly correlated
28 ZNF486 5 8.6 Weakly correlated
29 ZNF547 5 74.0 Weakly correlated
30 ZNF793 5 99.0 Highly correlated
31 ZNF182 4 99.0 Highly correlated
32 ZKSCAN1 4 160.0 Weakly correlated
33 ZNF682 3 28.9 Weakly correlated
34 ZNF705B 3 28.9 Weakly correlated
35 ZNF597 3 94.0 Moderately correlated
36 ZNF75D 3 94.0 Moderately correlated
37 ZNF705D 2 28.9 Weakly correlated
38 ZNF707 2 74.0 Weakly correlated
39 ZNF778 2 74.0 Weakly correlated
40 ZNF792 2 94.0 Moderately correlated
41 ZNF585B 2 99.0 Highly correlated
42 ZNF485 2 94.0 Moderately correlated
43 ZNF528 2 43.0 Weakly correlated
44 ZNF506 2 28.9 Weakly correlated
45 ZNF468 2 28.9 Weakly correlated
46 ZNF273 2 28.9 Weakly correlated
47 ZNF554 2 99.0 Highly correlated
48 ZNF202 2 160.0 Weakly correlated
49 ZNF189 2 99.0 Highly correlated
50 ZNF317 2 99.0 Highly correlated
51 ZNF140 1 99.0 Highly correlated
52 ZNF765 1 8.6 Weakly correlated
53 ZNF230 1 28.9 Weakly correlated
54 ZNF786 1 99.0 Highly correlated
55 ZNF284 1 43.0 Weakly correlated
56 ZNF823 1 43.0 Weakly correlated
57 ZNF85 1 28.9 Weakly correlated
58 ZNF878 1 43.0 Weakly correlated
59 ZNF8 1 99.0 Highly correlated
60 ZNF92 1 28.9 Weakly correlated
61 ZNF257 1 0.0 Weakly correlated
62 ZNF736 1 43.0 Weakly correlated
63 ZNF28 1 28.9 Weakly correlated
64 ZNF304 1 99.0 Highly correlated
65 ZNF334 1 99.0 Highly correlated
66 ZNF354C 1 99.0 Highly correlated
67 ZNF41 1 99.0 Highly correlated
68 ZNF626 1 0.0 Weakly correlated
69 ZNF429 1 28.9 Weakly correlated
70 ZNF441 1 43.0 Weakly correlated
71 ZNF558 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 13 28.9 Weakly correlated
2 ZNF766 8 43.0 Weakly correlated
3 ZNF534 6 19.6 Weakly correlated
4 ZIM3 2 87.0 Moderately correlated
5 ZNF506 2 28.9 Weakly correlated
6 ZNF485 2 94.0 Moderately correlated
7 ZNF75D 2 94.0 Moderately correlated
8 ZNF701 2 28.9 Weakly correlated
9 ZNF589 2 28.9 Weakly correlated
10 ZNF274 2 99.0 Highly correlated
11 ZNF251 2 94.0 Moderately correlated
12 ZNF792 1 94.0 Moderately correlated
13 ZNF723 1 15.2 Weakly correlated
14 ZNF549 1 87.0 Moderately correlated
15 ZFP37 1 99.0 Highly correlated
16 ZNF189 1 99.0 Highly correlated
17 ZNF101 1 43.0 Weakly correlated
18 ZNF468 1 28.9 Weakly correlated
19 ZNF140 1 99.0 Highly correlated
20 ZNF793 1 99.0 Highly correlated
21 ZNF765 1 8.6 Weakly correlated
22 ZNF479 1 6.4 Weakly correlated
23 ZNF736 1 43.0 Weakly correlated
24 ZNF626 1 0.0 Weakly correlated
25 ZNF584 1 99.0 Highly correlated
26 ZNF707 1 74.0 Weakly correlated
27 ZNF263 1 180.0 Weakly correlated
28 ZNF382 1 99.0 Highly correlated
29 ZNF197 1 99.0 Highly correlated
30 ZNF175 1 94.0 Moderately correlated
31 ZNF585B 1 99.0 Highly correlated
32 ZNF528 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF534 19.6 Weakly correlated
2 ZNF766 43.0 Weakly correlated