ZRdb KZFP & Repeats
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LTR_MER67B

  • Name
    MER67B
  • Repbase
    MER67B
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000908
Description :

MER67B is an LTR for a MER4-int type ERV; it has 4 bp TSDs. Note thatMER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaactgcagaactctcggcacataacgactccgtccaaacccctgcactaagagacttgaccaaactctagcatggcttctagcagcntaaggccgcgtccctaggatgaccccagcccccccttaaagtgcctgcctgagaaagctcaangctgccaggagaatttactgtttgttccagccaacacctgacgataggcccctgacctccctttcttagagcatttactaaaaagggcttacaattgtgaatccttcctctgtccctttgagatgtgtatgtatctcctacaactcaggagtgtctttctcaaggacctgagagccattcctttgaaatgtaatcatcaggaaggatagggcctctgtctcccagtctctgtgggaggatagaatcctaacttcgataantgccagctagcagacacagctggcctaatcgcatttacactgaccaaccctttgtaatttttcacttccctgactctactgagcccccgcgtnccctctccccactccctcattctccctttaaaacgcccagtcacctctgcacaaatcggaatggagctcagctctttcccctactgccagtagttactgaataaaatctgttttcaccgctttaactantgtccggctntgtttatctttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 21 43.0 Weakly correlated
2 ZNF263 14 180.0 Weakly correlated
3 ZNF394 13 99.0 Highly correlated
4 ZNF382 13 99.0 Highly correlated
5 ZNF169 12 94.0 Moderately correlated
6 ZNF610 9 28.9 Weakly correlated
7 ZNF2 7 99.0 Highly correlated
8 ZNF589 7 28.9 Weakly correlated
9 ZNF534 7 19.6 Weakly correlated
10 ZNF175 7 94.0 Moderately correlated
11 ZNF18 6 160.0 Weakly correlated
12 ZFP37 5 99.0 Highly correlated
13 ZNF324 5 99.0 Highly correlated
14 ZNF101 5 43.0 Weakly correlated
15 ZNF584 5 99.0 Highly correlated
16 ZIM3 5 87.0 Moderately correlated
17 ZFP57 4 87.0 Moderately correlated
18 ZNF28 4 28.9 Weakly correlated
19 ZNF282 4 319.0 Weakly correlated
20 ZNF274 4 99.0 Highly correlated
21 ZKSCAN1 4 160.0 Weakly correlated
22 ZNF197 4 99.0 Highly correlated
23 ZNF705D 3 28.9 Weakly correlated
24 ZNF679 3 28.9 Weakly correlated
25 ZKSCAN8 3 160.0 Weakly correlated
26 ZNF133 3 99.0 Highly correlated
27 ZNF479 3 6.4 Weakly correlated
28 ZNF331 3 94.0 Moderately correlated
29 ZNF778 2 74.0 Weakly correlated
30 ZNF701 2 28.9 Weakly correlated
31 ZNF682 2 28.9 Weakly correlated
32 ZNF680 2 28.9 Weakly correlated
33 ZNF251 2 94.0 Moderately correlated
34 ZKSCAN5 2 160.0 Weakly correlated
35 ZNF320 2 28.9 Weakly correlated
36 ZNF554 2 99.0 Highly correlated
37 ZNF140 2 99.0 Highly correlated
38 ZNF727 1 19.6 Weakly correlated
39 ZNF735 1 28.9 Weakly correlated
40 ZNF792 1 94.0 Moderately correlated
41 ZNF75D 1 94.0 Moderately correlated
42 ZFP69B 1 99.0 Highly correlated
43 ZNF780A 1 43.0 Weakly correlated
44 ZNF723 1 15.2 Weakly correlated
45 ZNF823 1 43.0 Weakly correlated
46 ZNF705B 1 28.9 Weakly correlated
47 ZNF695 1 28.9 Weakly correlated
48 ZNF558 1 99.0 Highly correlated
49 ZNF549 1 87.0 Moderately correlated
50 ZNF528 1 43.0 Weakly correlated
51 ZNF519 1 19.6 Weakly correlated
52 ZNF441 1 43.0 Weakly correlated
53 ZNF182 1 99.0 Highly correlated
54 ZNF317 1 99.0 Highly correlated
55 ZNF267 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 5 19.6 Weakly correlated
2 ZNF263 5 180.0 Weakly correlated
3 ZIM3 4 87.0 Moderately correlated
4 ZNF175 3 94.0 Moderately correlated
5 ZNF701 2 28.9 Weakly correlated
6 ZNF735 1 28.9 Weakly correlated
7 ZNF682 1 28.9 Weakly correlated
8 ZNF766 1 43.0 Weakly correlated
9 ZNF610 1 28.9 Weakly correlated
10 ZNF267 1 43.0 Weakly correlated
11 ZNF680 1 28.9 Weakly correlated
12 ZNF320 1 28.9 Weakly correlated
13 ZNF317 1 99.0 Highly correlated
14 ZNF780A 1 43.0 Weakly correlated
15 ZNF589 1 28.9 Weakly correlated
16 ZFP57 1 87.0 Moderately correlated
17 ZKSCAN5 1 160.0 Weakly correlated
18 ZNF584 1 99.0 Highly correlated
19 ZNF479 1 6.4 Weakly correlated
20 ZNF282 1 319.0 Weakly correlated
21 ZNF2 1 99.0 Highly correlated
22 ZNF28 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats