ZRdb KZFP & Repeats
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LTR_MER67A

  • Name
    MER67A
  • Repbase
    MER67A
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000907
Description :

MER67A is an LTR for a MER4-int type ERV with distant similarity toMER31B. This has 4bp TSDs. Found in humans and rodents. Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgacaaagattctctccttgaccaaactctagccaggctcctctgagccctcttctcgactaggcctcaaccttggcctataaagacttgaacaaacactaacatagtttctaacagctcaaggccgcatccctaggatgaccctagcccccccttaaagtgcctgcctgagaaaactcaaggctgccaaaagaatttactgtttgttccagccaacacctgaagatagggcccctgtctcccagtctctgtgggagggtaggagcctaacttcgataagcgccagttagcaaacccagatgggttnntcacatngacactnnccnaccttttgtaatttttcacttccctgactctactgagcccccgctcgtnccctctccctactccctcattctccctttaaaacgcccagtcacctctgtacaaatcgaagttgagttcagttcacgctggactcttttccctattgcaatagtatattactgattaaaatctgtccttaccgctttaactagtgtccggctttgtttatctttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 24 99.0 Highly correlated
2 ZNF766 16 43.0 Weakly correlated
3 ZNF263 15 180.0 Weakly correlated
4 ZNF589 10 28.9 Weakly correlated
5 ZNF394 10 99.0 Highly correlated
6 ZNF680 9 28.9 Weakly correlated
7 ZNF18 8 160.0 Weakly correlated
8 ZNF175 7 94.0 Moderately correlated
9 ZIM3 6 87.0 Moderately correlated
10 ZKSCAN1 6 160.0 Weakly correlated
11 ZFP37 6 99.0 Highly correlated
12 ZKSCAN8 6 160.0 Weakly correlated
13 ZNF2 6 99.0 Highly correlated
14 ZNF479 6 6.4 Weakly correlated
15 ZFP69B 5 99.0 Highly correlated
16 ZNF701 5 28.9 Weakly correlated
17 ZNF257 5 0.0 Weakly correlated
18 ZNF197 5 99.0 Highly correlated
19 ZNF584 5 99.0 Highly correlated
20 ZNF558 4 99.0 Highly correlated
21 ZNF169 4 94.0 Moderately correlated
22 ZNF101 4 43.0 Weakly correlated
23 ZNF597 3 94.0 Moderately correlated
24 ZNF705B 3 28.9 Weakly correlated
25 ZNF705D 2 28.9 Weakly correlated
26 ZNF317 2 99.0 Highly correlated
27 ZNF682 2 28.9 Weakly correlated
28 ZNF723 2 15.2 Weakly correlated
29 ZNF264 2 99.0 Highly correlated
30 ZNF519 2 19.6 Weakly correlated
31 ZNF808 2 19.6 Weakly correlated
32 ZNF534 2 19.6 Weakly correlated
33 ZNF547 2 74.0 Weakly correlated
34 ZNF610 2 28.9 Weakly correlated
35 ZNF554 2 99.0 Highly correlated
36 ZNF780A 2 43.0 Weakly correlated
37 ZNF140 2 99.0 Highly correlated
38 ZNF823 1 43.0 Weakly correlated
39 ZNF641 1 99.0 Highly correlated
40 ZNF677 1 99.0 Highly correlated
41 ZNF549 1 87.0 Moderately correlated
42 ZNF528 1 43.0 Weakly correlated
43 ZNF506 1 28.9 Weakly correlated
44 ZNF490 1 43.0 Weakly correlated
45 ZNF468 1 28.9 Weakly correlated
46 ZNF347 1 43.0 Weakly correlated
47 ZNF343 1 74.0 Weakly correlated
48 ZNF324 1 99.0 Highly correlated
49 ZNF273 1 28.9 Weakly correlated
50 ZNF251 1 94.0 Moderately correlated
51 ZNF182 1 99.0 Highly correlated
52 ZNF12 1 99.0 Highly correlated
53 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 4 28.9 Weakly correlated
2 ZNF263 2 180.0 Weakly correlated
3 ZNF479 2 6.4 Weakly correlated
4 ZNF382 2 99.0 Highly correlated
5 ZNF18 2 160.0 Weakly correlated
6 ZIM3 2 87.0 Moderately correlated
7 ZNF597 1 94.0 Moderately correlated
8 ZNF723 1 15.2 Weakly correlated
9 ZNF534 1 19.6 Weakly correlated
10 ZNF780A 1 43.0 Weakly correlated
11 ZFP69B 1 99.0 Highly correlated
12 ZNF701 1 28.9 Weakly correlated
13 ZNF808 1 19.6 Weakly correlated
14 ZNF554 1 99.0 Highly correlated
15 ZNF347 1 43.0 Weakly correlated
16 ZNF506 1 28.9 Weakly correlated
17 ZNF468 1 28.9 Weakly correlated
18 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats