ZRdb KZFP & Repeats
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LTR_MER66D

  • Name
    MER66D
  • Repbase
    MER66D
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000905
Description :

MER66D is a relatively recent MER66 subfamily. Note that MER stands forMEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggtaggagatcagcaggacttgttttccgagcaccggtcacgaccctgctgatcaaaacaggatgtagcaaagaaaccggccaaaaccagctaggaccaggaattataatgcattngcataagacactcccaccagcgccatgacagtttacaaatgccatggcaacgacccggaagttaccttatatggttccgggaactccccgccccttttccagaaagttcgtgaataacccgccccttatttagcatataattaagagtaggtataaatatagctagccagcaatccacgagtgctactctgggccgctctgcctatggggtagccctgctctgtctatggagcagccattttgctgtacactgttgctctaataaacttgctttctttcactgtcggctcgctcttgaattctttcctgngcgaagccaagaaccctcccgggctgagccccaattttggggttcgcctgcatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF682 104 28.9 Moderately correlated
2 ZNF766 23 43.0 Highly correlated
3 ZNF679 16 28.9 Moderately correlated
4 ZKSCAN8 9 160.0 Weakly correlated
5 ZNF175 8 94.0 Weakly correlated
6 ZNF589 8 28.9 Moderately correlated
7 ZNF584 7 99.0 Weakly correlated
8 ZNF263 7 180.0 Weakly correlated
9 ZNF793 6 99.0 Weakly correlated
10 ZNF394 5 99.0 Weakly correlated
11 ZNF197 5 99.0 Weakly correlated
12 ZNF382 4 99.0 Weakly correlated
13 ZNF317 4 99.0 Weakly correlated
14 ZFP28 4 99.0 Weakly correlated
15 ZNF75D 3 94.0 Weakly correlated
16 ZNF705B 2 28.9 Moderately correlated
17 ZNF479 2 6.4 Weakly correlated
18 ZIM3 2 87.0 Weakly correlated
19 ZKSCAN1 2 160.0 Weakly correlated
20 ZNF267 1 43.0 Highly correlated
21 ZNF93 1 8.6 Weakly correlated
22 ZNF823 1 43.0 Highly correlated
23 ZNF18 1 160.0 Weakly correlated
24 ZNF250 1 99.0 Weakly correlated
25 ZNF705D 1 28.9 Moderately correlated
26 ZNF251 1 94.0 Weakly correlated
27 ZNF701 1 28.9 Moderately correlated
28 ZNF324 1 99.0 Weakly correlated
29 ZNF273 1 28.9 Moderately correlated
30 ZNF274 1 99.0 Weakly correlated
31 ZNF28 1 28.9 Moderately correlated
32 ZNF554 1 99.0 Weakly correlated
33 ZNF519 1 19.6 Weakly correlated
34 ZNF506 1 28.9 Moderately correlated
35 ZNF2 1 99.0 Weakly correlated
36 ZNF436 1 180.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF682 55 28.9 Moderately correlated
2 ZNF793 5 99.0 Weakly correlated
3 ZNF317 2 99.0 Weakly correlated
4 ZNF479 2 6.4 Weakly correlated
5 ZNF766 2 43.0 Highly correlated
6 ZNF75D 2 94.0 Weakly correlated
7 ZFP28 1 99.0 Weakly correlated
8 ZNF263 1 180.0 Weakly correlated
9 ZNF382 1 99.0 Weakly correlated
10 ZNF584 1 99.0 Weakly correlated
11 ZNF2 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats