ZRdb KZFP & Repeats
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LTR_MER66C

  • Name
    MER66C
  • Repbase
    MER66C
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000904
Description :

MER66C is an LTR related to MER41B. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggtaggagaccggcaggacttgttttctggtcacaaccctgctgaccaaaacaggatctggtccagacaggataaagtgaagaaaccggcaggaaccagcagatggcgacgaaagcgatccctagctgccctcattgctcattagcataagacactcccaccagcgccatgacagtttacaaatgccatggcaacgacccggaagttaccacccctttccatggcaacgacccggaagttaccgcccctttcctagaaagttctaaataacccgcccctcaatttgcattgacccgccccttaatttgcatgtaattgaaagtgggtntaagtgagtataaatacagttgccaagagcccatacgttgccgactctgggcgcactgcctatgagttagccctgctccgcaaggagcagtaccgttcaataaaagattgctgtctaacaccaccggctcgcccttgaattctttcctgggcgaagccaagaaccctcccgggctaagccccaattttggggctcgcctgtcctgcatcatctggctaccatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF682 196 28.9 Moderately correlated
2 ZNF766 59 43.0 Highly correlated
3 ZNF382 44 99.0 Weakly correlated
4 ZNF680 35 28.9 Moderately correlated
5 ZNF589 29 28.9 Moderately correlated
6 ZNF584 23 99.0 Weakly correlated
7 ZNF197 23 99.0 Weakly correlated
8 ZKSCAN8 23 160.0 Weakly correlated
9 ZKSCAN1 21 160.0 Weakly correlated
10 ZNF18 21 160.0 Weakly correlated
11 ZNF263 20 180.0 Weakly correlated
12 ZNF175 18 94.0 Weakly correlated
13 ZNF878 14 43.0 Highly correlated
14 ZNF394 14 99.0 Weakly correlated
15 ZNF701 9 28.9 Moderately correlated
16 ZNF610 8 28.9 Moderately correlated
17 ZFP37 8 99.0 Weakly correlated
18 ZNF324 8 99.0 Weakly correlated
19 ZNF317 8 99.0 Weakly correlated
20 ZNF2 8 99.0 Weakly correlated
21 ZFP69B 7 99.0 Weakly correlated
22 ZNF679 7 28.9 Moderately correlated
23 ZNF705D 5 28.9 Moderately correlated
24 ZNF723 5 15.2 Weakly correlated
25 ZNF506 5 28.9 Moderately correlated
26 ZNF75A 5 94.0 Weakly correlated
27 ZNF101 5 43.0 Highly correlated
28 ZNF705B 5 28.9 Moderately correlated
29 ZNF92 4 28.9 Moderately correlated
30 ZNF528 4 43.0 Highly correlated
31 ZNF597 4 94.0 Weakly correlated
32 ZNF793 4 99.0 Weakly correlated
33 ZNF251 4 94.0 Weakly correlated
34 ZNF479 3 6.4 Weakly correlated
35 ZNF695 3 28.9 Moderately correlated
36 ZNF549 3 87.0 Weakly correlated
37 ZNF91 2 6.0 Weakly correlated
38 ZNF587 2 28.9 Moderately correlated
39 ZFP57 2 87.0 Weakly correlated
40 ZNF558 2 99.0 Weakly correlated
41 ZNF554 2 99.0 Weakly correlated
42 ZNF333 2 99.0 Weakly correlated
43 ZKSCAN5 2 160.0 Weakly correlated
44 ZNF486 2 8.6 Weakly correlated
45 ZNF468 2 28.9 Moderately correlated
46 ZNF337 2 43.0 Highly correlated
47 ZNF274 2 99.0 Weakly correlated
48 ZNF182 2 99.0 Weakly correlated
49 ZNF160 1 74.0 Weakly correlated
50 ZNF700 1 28.9 Moderately correlated
51 ZNF284 1 43.0 Highly correlated
52 ZNF26 1 99.0 Weakly correlated
53 ZNF257 1 0.0 Weakly correlated
54 ZNF681 1 28.9 Moderately correlated
55 ZNF140 1 99.0 Weakly correlated
56 ZNF84 1 99.0 Weakly correlated
57 ZNF10 1 99.0 Weakly correlated
58 ZIM3 1 87.0 Weakly correlated
59 ZNF93 1 8.6 Weakly correlated
60 ZNF334 1 99.0 Weakly correlated
61 ZNF547 1 74.0 Weakly correlated
62 ZNF350 1 99.0 Weakly correlated
63 ZNF674 1 99.0 Weakly correlated
64 ZNF641 1 99.0 Weakly correlated
65 ZNF614 1 99.0 Weakly correlated
66 ZNF417 1 28.9 Moderately correlated
67 ZNF440 1 28.9 Moderately correlated
68 ZNF441 1 43.0 Highly correlated
69 ZNF566 1 99.0 Weakly correlated
70 ZNF563 1 28.9 Moderately correlated
71 ZNF519 1 19.6 Weakly correlated
72 ZNF557 1 15.2 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF682 102 28.9 Moderately correlated
2 ZNF2 4 99.0 Weakly correlated
3 ZNF766 4 43.0 Highly correlated
4 ZNF506 4 28.9 Moderately correlated
5 ZNF589 3 28.9 Moderately correlated
6 ZNF793 3 99.0 Weakly correlated
7 ZNF197 3 99.0 Weakly correlated
8 ZNF317 3 99.0 Weakly correlated
9 ZNF610 3 28.9 Moderately correlated
10 ZNF75A 3 94.0 Weakly correlated
11 ZNF723 2 15.2 Weakly correlated
12 ZNF587 2 28.9 Moderately correlated
13 ZNF584 2 99.0 Weakly correlated
14 ZNF382 2 99.0 Weakly correlated
15 ZNF263 2 180.0 Weakly correlated
16 ZNF337 2 43.0 Highly correlated
17 ZIM3 1 87.0 Weakly correlated
18 ZNF251 1 94.0 Weakly correlated
19 ZNF257 1 0.0 Weakly correlated
20 ZNF440 1 28.9 Moderately correlated
21 ZNF175 1 94.0 Weakly correlated
22 ZNF641 1 99.0 Weakly correlated
23 ZNF701 1 28.9 Moderately correlated
24 ZNF528 1 43.0 Highly correlated
25 ZNF479 1 6.4 Weakly correlated
26 ZNF10 1 99.0 Weakly correlated
27 ZNF101 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats