ZRdb KZFP & Repeats
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LTR_MER66B

  • Name
    MER66B
  • Repbase
    MER66B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000903
Description :

MER66B is an LTR related to MER41B. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggtaggaggcgggactcgactccggaggcggggctcggacaccggaccaaattgaggactagctaaaacagggncggggcggaagcagctttccataagacacgcccaccagtgccatgtcagtttaccattgccatggcaacacccggaagttaccgcccctttccatggcaacgacccgacgacccggaagttaccacccttttcctagaaatttctgcataaaccgccccttaatttgcatgtaattaaaagtgggtataaatatgactgcagaactgcctctgagctgctactctgggcacactgcctatggggtagccctgctccgcaaggagcagtacctctgctgctgctgtacactgccgcttcaataaaagttgctgtctaacaccaccggctcgcccttgaattctttcctgggcgaagccaagaaccctcccgggctaagccccaatttgggggctcgcctgccctgcatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF682 699 28.9 Moderately correlated
2 ZNF382 89 99.0 Weakly correlated
3 ZNF2 42 99.0 Weakly correlated
4 ZNF394 30 99.0 Weakly correlated
5 ZNF263 24 180.0 Weakly correlated
6 ZNF506 20 28.9 Moderately correlated
7 ZFP37 18 99.0 Weakly correlated
8 ZFP69B 18 99.0 Weakly correlated
9 ZNF766 18 43.0 Highly correlated
10 ZFP57 15 87.0 Weakly correlated
11 ZKSCAN1 13 160.0 Weakly correlated
12 ZNF101 13 43.0 Highly correlated
13 ZNF175 12 94.0 Weakly correlated
14 ZNF18 11 160.0 Weakly correlated
15 ZNF317 11 99.0 Weakly correlated
16 ZNF324 11 99.0 Weakly correlated
17 ZNF558 11 99.0 Weakly correlated
18 ZNF793 10 99.0 Weakly correlated
19 ZNF554 9 99.0 Weakly correlated
20 ZNF610 9 28.9 Moderately correlated
21 ZNF680 9 28.9 Moderately correlated
22 ZNF257 7 0.0 Weakly correlated
23 ZNF441 7 43.0 Highly correlated
24 ZNF707 7 74.0 Weakly correlated
25 ZNF8 7 99.0 Weakly correlated
26 ZNF534 6 19.6 Weakly correlated
27 ZNF585B 6 99.0 Weakly correlated
28 ZNF589 6 28.9 Moderately correlated
29 ZNF92 6 28.9 Moderately correlated
30 ZNF251 5 94.0 Weakly correlated
31 ZNF679 5 28.9 Moderately correlated
32 ZKSCAN8 4 160.0 Weakly correlated
33 ZNF486 4 8.6 Weakly correlated
34 ZNF528 4 43.0 Highly correlated
35 ZNF547 4 74.0 Weakly correlated
36 ZNF641 4 99.0 Weakly correlated
37 ZNF705B 4 28.9 Moderately correlated
38 ZNF765 4 8.6 Weakly correlated
39 ZNF792 4 94.0 Weakly correlated
40 ZIM3 3 87.0 Weakly correlated
41 ZNF197 3 99.0 Weakly correlated
42 ZNF273 3 28.9 Moderately correlated
43 ZNF28 3 28.9 Moderately correlated
44 ZNF320 3 28.9 Moderately correlated
45 ZNF468 3 28.9 Moderately correlated
46 ZNF695 3 28.9 Moderately correlated
47 ZNF701 3 28.9 Moderately correlated
48 ZNF75D 3 94.0 Weakly correlated
49 ZNF786 3 99.0 Weakly correlated
50 ZNF100 2 28.9 Moderately correlated
51 ZNF140 2 99.0 Weakly correlated
52 ZNF141 2 43.0 Highly correlated
53 ZNF182 2 99.0 Weakly correlated
54 ZNF189 2 99.0 Weakly correlated
55 ZNF282 2 319.0 Weakly correlated
56 ZNF425 2 94.0 Weakly correlated
57 ZNF429 2 28.9 Moderately correlated
58 ZNF479 2 6.4 Weakly correlated
59 ZNF490 2 43.0 Highly correlated
60 ZNF519 2 19.6 Weakly correlated
61 ZNF530 2 28.9 Moderately correlated
62 ZNF573 2 94.0 Weakly correlated
63 ZNF583 2 99.0 Weakly correlated
64 ZNF584 2 99.0 Weakly correlated
65 ZNF705D 2 28.9 Moderately correlated
66 ZNF723 2 15.2 Weakly correlated
67 ZNF808 2 19.6 Weakly correlated
68 RBAK 1 99.0 Weakly correlated
69 ZFP1 1 99.0 Weakly correlated
70 ZFP69 1 99.0 Weakly correlated
71 ZKSCAN2 1 180.0 Weakly correlated
72 ZKSCAN5 1 160.0 Weakly correlated
73 ZNF202 1 160.0 Weakly correlated
74 ZNF250 1 99.0 Weakly correlated
75 ZNF264 1 99.0 Weakly correlated
76 ZNF267 1 43.0 Highly correlated
77 ZNF26 1 99.0 Weakly correlated
78 ZNF287 1 99.0 Weakly correlated
79 ZNF347 1 43.0 Highly correlated
80 ZNF354C 1 99.0 Weakly correlated
81 ZNF37A 1 99.0 Weakly correlated
82 ZNF417 1 28.9 Moderately correlated
83 ZNF430 1 19.6 Weakly correlated
84 ZNF431 1 28.9 Moderately correlated
85 ZNF432 1 99.0 Weakly correlated
86 ZNF436 1 180.0 Weakly correlated
87 ZNF445 1 99.0 Weakly correlated
88 ZNF485 1 94.0 Weakly correlated
89 ZNF549 1 87.0 Weakly correlated
90 ZNF555 1 94.0 Weakly correlated
91 ZNF559 1 74.0 Weakly correlated
92 ZNF562 1 28.9 Moderately correlated
93 ZNF563 1 28.9 Moderately correlated
94 ZNF566 1 99.0 Weakly correlated
95 ZNF585A 1 99.0 Weakly correlated
96 ZNF587 1 28.9 Moderately correlated
97 ZNF597 1 94.0 Weakly correlated
98 ZNF605 1 99.0 Weakly correlated
99 ZNF611 1 19.6 Weakly correlated
100 ZNF671 1 94.0 Weakly correlated
101 ZNF700 1 28.9 Moderately correlated
102 ZNF705E 1 0.0 Weakly correlated
103 ZNF735 1 28.9 Moderately correlated
104 ZNF75A 1 94.0 Weakly correlated
105 ZNF777 1 319.0 Weakly correlated
106 ZNF778 1 74.0 Weakly correlated
107 ZNF799 1 43.0 Highly correlated
108 ZNF816 1 28.9 Moderately correlated
109 ZNF81 1 99.0 Weakly correlated
110 ZNF84 1 99.0 Weakly correlated
111 ZNF879 1 99.0 Weakly correlated
112 ZNF891 1 99.0 Weakly correlated
113 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF682 354 28.9 Moderately correlated
2 ZNF506 19 28.9 Moderately correlated
3 ZNF793 6 99.0 Weakly correlated
4 ZNF317 5 99.0 Weakly correlated
5 ZNF257 3 0.0 Weakly correlated
6 ZNF263 3 180.0 Weakly correlated
7 ZNF707 3 74.0 Weakly correlated
8 ZFP57 2 87.0 Weakly correlated
9 ZNF468 2 28.9 Moderately correlated
10 ZNF766 2 43.0 Highly correlated
11 ZNF382 2 99.0 Weakly correlated
12 ZNF680 2 28.9 Moderately correlated
13 ZNF534 2 19.6 Weakly correlated
14 ZFP69B 2 99.0 Weakly correlated
15 ZNF101 2 43.0 Highly correlated
16 ZNF141 2 43.0 Highly correlated
17 ZNF28 1 28.9 Moderately correlated
18 ZNF75A 1 94.0 Weakly correlated
19 ZNF735 1 28.9 Moderately correlated
20 ZNF671 1 94.0 Weakly correlated
21 ZNF605 1 99.0 Weakly correlated
22 ZNF549 1 87.0 Weakly correlated
23 ZFP37 1 99.0 Weakly correlated
24 ZNF705B 1 28.9 Moderately correlated
25 ZKSCAN1 1 160.0 Weakly correlated
26 ZNF75D 1 94.0 Weakly correlated
27 ZNF2 1 99.0 Weakly correlated
28 ZNF189 1 99.0 Weakly correlated
29 ZNF723 1 15.2 Weakly correlated
30 ZNF695 1 28.9 Moderately correlated
31 ZNF573 1 94.0 Weakly correlated
32 ZNF417 1 28.9 Moderately correlated
33 ZNF320 1 28.9 Moderately correlated
34 ZNF530 1 28.9 Moderately correlated
35 ZNF610 1 28.9 Moderately correlated
36 ZNF490 1 43.0 Highly correlated
37 ZNF429 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF506 28.9 Moderately correlated
2 ZNF793 99.0 Weakly correlated