ZRdb KZFP & Repeats
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LTR_MER66A

  • Name
    MER66A
  • Repbase
    MER66A
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000902
Description :

MER66A is an LTR related to MER41B. This contains terminal TG...CAdinucleotides, a poly A signal and 4 bp TSDs. Note that MER stands forMEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggtaggaggcgggactcgactccggaggcggggctcgaactccggaccagattgaagactggctgaaacagggaagaggcgaaagcacctctccataagacacgcccaccagtgccatgtcagtttaccattgccatggcaacacccggaagttaccgcccctttccatggcaacgacccggaagttaccaccccttttctagaaatttctgaataacccgccccttaatttgcatgtaattaaaagtgggtataaatatgactgcagaactgcccctgagctgctactctnggcacactgcctatggggtagccctgctccgcaaggagcagtacctctgctgctgctgtacactgccgcctcaataaaagctgctttctnccaccaccggctcgcccttgaattctttcctgggcgaagccaagaaccctcccgggctaagccccaattttggggctcgcctgccctgcatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF682 127 28.9 Moderately correlated
2 ZNF382 18 99.0 Weakly correlated
3 ZNF766 11 43.0 Highly correlated
4 ZNF680 9 28.9 Moderately correlated
5 ZNF506 9 28.9 Moderately correlated
6 ZNF723 7 15.2 Weakly correlated
7 ZNF2 7 99.0 Weakly correlated
8 ZNF175 6 94.0 Weakly correlated
9 ZNF263 6 180.0 Weakly correlated
10 ZFP57 5 87.0 Weakly correlated
11 ZNF394 5 99.0 Weakly correlated
12 ZKSCAN1 5 160.0 Weakly correlated
13 ZNF197 4 99.0 Weakly correlated
14 ZNF589 4 28.9 Moderately correlated
15 ZNF554 4 99.0 Weakly correlated
16 ZFP37 4 99.0 Weakly correlated
17 ZNF324 4 99.0 Weakly correlated
18 ZNF793 4 99.0 Weakly correlated
19 ZKSCAN8 4 160.0 Weakly correlated
20 ZIM3 3 87.0 Weakly correlated
21 ZNF679 3 28.9 Moderately correlated
22 ZFP69B 3 99.0 Weakly correlated
23 ZNF534 3 19.6 Weakly correlated
24 ZNF18 2 160.0 Weakly correlated
25 ZNF479 2 6.4 Weakly correlated
26 ZNF75D 2 94.0 Weakly correlated
27 ZNF101 2 43.0 Highly correlated
28 ZNF547 2 74.0 Weakly correlated
29 ZNF273 2 28.9 Moderately correlated
30 ZNF100 2 28.9 Moderately correlated
31 ZNF701 2 28.9 Moderately correlated
32 ZNF584 2 99.0 Weakly correlated
33 ZNF257 2 0.0 Weakly correlated
34 ZNF610 2 28.9 Moderately correlated
35 ZNF816 1 28.9 Moderately correlated
36 ZNF93 1 8.6 Weakly correlated
37 ZNF92 1 28.9 Moderately correlated
38 ZNF700 1 28.9 Moderately correlated
39 ZNF705D 1 28.9 Moderately correlated
40 ZNF75A 1 94.0 Weakly correlated
41 ZNF763 1 15.2 Weakly correlated
42 ZNF813 1 28.9 Moderately correlated
43 ZNF611 1 19.6 Weakly correlated
44 ZNF560 1 43.0 Highly correlated
45 ZNF558 1 99.0 Weakly correlated
46 ZNF557 1 15.2 Weakly correlated
47 ZNF555 1 94.0 Weakly correlated
48 ZKSCAN5 1 160.0 Weakly correlated
49 ZNF429 1 28.9 Moderately correlated
50 ZNF420 1 94.0 Weakly correlated
51 ZNF417 1 28.9 Moderately correlated
52 ZNF30 1 94.0 Weakly correlated
53 ZNF182 1 99.0 Weakly correlated
54 ZNF251 1 94.0 Weakly correlated
55 ZNF230 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF682 66 28.9 Moderately correlated
2 ZNF506 7 28.9 Moderately correlated
3 ZNF793 4 99.0 Weakly correlated
4 ZNF680 2 28.9 Moderately correlated
5 ZNF723 2 15.2 Weakly correlated
6 ZNF75A 1 94.0 Weakly correlated
7 ZNF417 1 28.9 Moderately correlated
8 ZNF766 1 43.0 Highly correlated
9 ZNF534 1 19.6 Weakly correlated
10 ZNF75D 1 94.0 Weakly correlated
11 ZNF479 1 6.4 Weakly correlated
12 ZNF382 1 99.0 Weakly correlated
13 ZFP57 1 87.0 Weakly correlated
14 ZNF263 1 180.0 Weakly correlated
15 ZNF100 1 28.9 Moderately correlated
16 ZKSCAN5 1 160.0 Weakly correlated
17 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats