ZRdb KZFP & Repeats
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LTR_MER66-INT

  • Name
    MER66-INT
  • Repbase
    MER66_I
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000906
Description :

MER66-int is mostly closely related to PRIMA41-int. Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tctggtgaccacgaagggacgaagacggcaagcgagagagagtgaganagcggagatggcgatcggcggagagacaagatggcgagacagtggcgatgacggcaatcggcgatcagtggagaggcagcgatcggcgagagatggcgagacggcgatcaagagctgcagagcngtaacactgaggctgtaacaatanagagctgctaacactgcagagctgtaacactagccaaaggctcttttcagagccatcatctttcctggcaggcggcggagccgagcggacgggcgagcggccatagtgccgccgcctcgtgtgggacccgccgctccgaccggcaggccggtgggttaccggtccccgcgccggcccctcccgccgcggcagccgagcccacccaagctgagggaacctggagaagaccttcacccgggtcccacgtggaagaccggtcggcgccattttggctcctgcggacgggtgagtgtcccctctgcccccnccccataatatcgggtgagccagggaataaaagcctttggctaggtggtcagttnaaagtcccccgtcgtttgggtgccccgaagcacgtccttgtcaccccttcccccggtcctttctcctctgactccattttattgctccaccagccattttattttcagtcctaaaatgtatgtttcgtttgcagtcttatttttgcttttgactttctgttaactgtttgggcaattgtttaaggcaggacacttggttgtgagaggtcccccgttgtgttgactctgggacgccagagtcacgttgttctgtggccccaactnggcctttggggttcactgttggccgccccccggatgctccggggttttcggcatttggtgagcccccggatactccggggtttctggcatttggtgtggggaccctcgttggctcgatactcgggtactccgggttttcggcatttggtattgttggccgccccccggatgctccggggttttcggcattgacattccctctaggattgtgggttagagncccaccctaggggaatcttggtcttgccttttcttgttttctgccctaaagnttatcattttccgtaacagcattttcttttcttattgtcactttatttacacttttccttctacactttgcttaataaaaatacttttttgtcgtatttcgttcactggcaaatgctcataatccactttcgtaacgccttgctacctatactttgncaggaagtgggaatctaaaagggaaaagtaacaaaggcccagttgctttcgctctcgctagacttagaaaaacttctgtgtccagtagagatccttgttagacatggggacaacggcgagcatcccagaggactcgccactagggtgtcttttaggcaattggagcaaattcaaattcggcttaaagaaaaagaaactcattttctattgcaacaccgtttgggtccaatacaaattggaaaaccaacagatttggcctaaacatggttctttacgttataatgctattttacaattagacttattctgtaaaaaggaaggaaaatgggaagaggtcccttatgtacaggcttttatggccctttaccaggatcctgacctaagggntagctgtagaatgtgtggctcatgttacttccaggcaccaggaagccgcaccagatatgcctaggngatcccctcctagctgctccccctagaaggcctacgccctcccttcggagcctcctcagtcccccagttctgaggggggtcccgccagttctctagcgcaggattccaccccaaggtcatcaggcacccctcccccttatccaactagccccagcctataccccccgctgcccgaggaagtaagcccaaccagtaccaccaggagtggggccccatatcagcccctaaaatcgaacctgtgtccattgcgggaggtagctgacggagatgggggaacantcagagtacatgtgccnttttctatgtctgatttggctttatgcaaggaaaaatttggccggttttcggaggatccagggaagtttatagaggagtttgttaagttgaccatgtcctttgatttaacttggcatgacttgcaaatattgtcgtccgcttgctgtgccgtagaggaaaaacaaaggattctgggtactgcccgtgaatatgcagatggagtggccgctcgtaaccaaggccatgccatttatcgtgtggggggagatgcagttccagatctagaccctcagtgggattaccagaggggttcccaagatctcgaacgcagaaatcacatgctaacttgtttaatagaagcggangaaaaagtgtgtggttaagccagttaattatgacaaggttagagaaataactcaggggaaagatgaaaatcccgctctgtttcagggccgtttggttgaggcactcaggaaatatactaatgcagacccagactccccggaagggcgagctctcctgggtatgcattttattactcaatctgcccctgacattaggaggaagctacaaaaagcagcaatgggacctcaaacccctatgagccaactcttaaacatggcctttgggtttacaacaatagggacagggcagagaagaggcgaaaacaaaagaaatagccaaaaagcgcaattgttagcggctgctttaagccccctgccgcctcagggttacccatcccgagaaagtgtcgcgagatcggcgtctgggatgcccagacgagagcccccgactcgccggcccctgggccagaatcagtgtgcctnctgtaagcaagagggccactggnaanaggacgtcctaaccgtccccggtgagagaggaaagctccccgtcaatactagagctaaccttcttccactagccccnaacgagctgccttgctcaagtaagtttactgggggtctggacccttgacccgacggacagcttcccacagtggcagacaagcggccgcccgaacatttttcttcggtgtctccgctgctgggtgagctctccggcggctcggggactccggggtctccccttgagcaacgcggttcgccccgctcccttccttatttgatgctatgggatccccttccctgcctcttcctgtcttccatacctattggggcaaacaaaatttggccaggtagacgggtcccaattttgtaaataacttggatccagttgtcttgtataggtcgctttatttnatgtgtttaggtgtatatacaggtgtgatgtgtgttgtgtctagcatgctatcaaattggcttataaataaaagagcgctcataaattaanacaagactagtctaaacttattagtttgaagaatgttgtgtcttctaaaatttaactttaagatttttacctaggtaaatcactgatgttcgtaggctttaaaatggttaaaatggctaatggtgactagctttgcgtggtatcttggttcttggaggtggtctagataaaactgttaaaagtgaaaangttaaatacatgtgaatggaatagatgcttaaatagtgagcttnttgtgtggtttaaaatcttaaaattgtagaatggttctcatctatagaatgccaatgtctggtgggcagttcaggatttcttgcttcctaggtttatataaaatgtgccaaagaaatgtattctttattgggaaaaaanatttttgtctaattcggaagttattaaaagggaggttcaaaatataagggaaccagtgagtagaaaagagagatgtaaagaaagttatggatagaaaatgtatttttngcaaggaatatataaaaaagagtaattttgtatgagaaaggatcttgtatggtaaattcttgtcctaaagtaaaatgactggttatttaagaaagaggtagtataggacaagtcagaaagtccaagcatgtcgtagatggtctgtgtaagtcgtgataaggttcgtgaaggggaatttatgaaaggaatttttgtgtgtgattaagttggctataattaaaaggaaattgtttataatagnctttctaaagaatggtctacgtnttaaaacnaaattttcttaaggtattgatttgctaaattacnagaaattttgcttttcaattctataatctatttcttttgaaagcttctcagcgnattcatgtaactctctcctttagctttttcgtcagctcctgtgagttttttcctccggttctgttgttgtggcctgatgctaaagtgttttgtcttagaggtctatgggagcaatgttttcccccagtatagtttctattgatataaccttatttttggcttttggtttttgactcttatattgcttaaaagggttttaagggctaatgagtgcctgcccacctccattcccgtctggcctagaacgtttaattggctataagtcttttgactctaagtcccttggccanaggaaattccaaaggnnntncgnnactaannccgcgcgtnncggnaaacangnnatnagncananctcgctntnccccctttanaacttaggccaggttcaaaaggcccttcaagaatatggaaataaagtattgcctcccacaagacttagtcttactaaaaacttggaaagaaggatcccccgaggatcaattacaaccaaaatggaagggccctatcaggtattgttaagtacccccactgctgttaaacttcagggaatnactagctgggtacacctgtccaggattaaacctgtttcttatgagtcgcaggcacaagaggaggacaccacgacctacatctgtgaacctttggaagacctccgctacctatttaaaagaatcaacactcagccagaagtggtaacgtgatgctgtgggtgggaataggagcattaatttttctcttcttcctgattgtaatacttcttttctatcgctttagccaaccgcctcctcctgggaaacacctcttttgtccttgttgggtgtagaggccactctaaggcccaaccggacaccatgctgccactgttaatcctgtttgctctcccaattaccctgatccagtgtgggtgggaacaaaactctatagtaaatatttcaaaaattatagcatcagggaatcatcttcatggttgctggatttgtcatcaacatccccaggatagagagttccaccttctggcctatccggaaaatctcacggccatctccccagacctcctaactaaccatagcgatcccgaagtacccagacccctacttgttaggtggaactctcccccacttaacggattccacctgaacctcccccaccactattacctggacctgggaagttgggtatctatatctccagtgcactaatgattctatcttttgcacccactgttgtgttaatgacacaaaagcggaagtttccctgcgatgctctgatccaactctagttgccaagttcccaaggccgcagcgaggtaaatgggattccacttgtaagcgaggagaccatatatggtgccttctcccggatcagaacatacaggggaaaaacaactgcctaatctgggaaggtgggagtaccgcccccttctggaaaacaaagattgttcgaccacccccattggaacaggggaaaaatatctctatagacccaacttggcagcaaaggatagacatcacaccccgtagggcctctatttgtgccccaactgggctcatttttgtttgtggccatgaatgggaagaagtcacaccccgtaaccactcccgactccctagggagccacctgttcttttaggagtagctttcccttgtatatcaaaaacttggaacagaggtgaatgtacgttggccacccttgcccctccaggggtcacngtctataaccccataagacccaggaataccagaagtaagcgagcaataggattaattctggcgggaatcggggcggcaataggactagcggcaccctggggcggctttgcctaccacgagtcaaccctaaagaacttgactcaaaccctagaatccttagccaccaacacaggtcaggcattaaagggaattcaagagtccctagactctttggcaaatgtagttctcgataacagactagcgttggattatttactagctgaacaaggtggagtctgtgcagttattaataaaacctgctgcacatatattaacaactctggacaggttgaggttaacattcaaaagatctatgagcaagctacctggttacatagatataaccagggcactgaccccaactatatctggtcgactatcaaaagtgccttcccaagtctcacctggtttttacctctcctaggacctttgatagctatcttgttattactaatttttggcccttgcttgtttaacctcctagtaaagtttgtgtcttctagattacaacagttccacgtaaagacgatgctggcacaaggcttccaacccatcccgtctnctgacccggagaatgaaagcatcctgcctttgggccccttagatcaggtatccagagatttttactcctccagtgctaggcagggcctacgcccataaaatcagcaggaagcagttacagaagatggacctccgcccttctgcagcccccttaagattaaggaggagtatctaatctctgaggggggaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 31 99.0 Weakly correlated
2 ZNF682 21 28.9 Moderately correlated
3 ZNF723 14 15.2 Weakly correlated
4 ZNF324 11 99.0 Weakly correlated
5 ZNF766 9 43.0 Highly correlated
6 ZNF263 9 180.0 Weakly correlated
7 ZNF486 8 8.6 Weakly correlated
8 ZNF679 8 28.9 Moderately correlated
9 ZNF680 7 28.9 Moderately correlated
10 ZNF558 6 99.0 Weakly correlated
11 ZNF549 6 87.0 Weakly correlated
12 ZNF394 6 99.0 Weakly correlated
13 ZNF479 6 6.4 Weakly correlated
14 ZNF701 5 28.9 Moderately correlated
15 ZNF610 5 28.9 Moderately correlated
16 ZIM3 5 87.0 Weakly correlated
17 ZNF2 4 99.0 Weakly correlated
18 ZNF317 4 99.0 Weakly correlated
19 ZNF528 4 43.0 Highly correlated
20 ZNF534 4 19.6 Weakly correlated
21 ZNF197 4 99.0 Weakly correlated
22 ZKSCAN1 4 160.0 Weakly correlated
23 ZNF554 3 99.0 Weakly correlated
24 ZNF707 3 74.0 Weakly correlated
25 ZNF92 3 28.9 Moderately correlated
26 ZFP37 3 99.0 Weakly correlated
27 ZFP57 3 87.0 Weakly correlated
28 ZNF257 3 0.0 Weakly correlated
29 ZNF669 2 43.0 Highly correlated
30 ZNF182 2 99.0 Weakly correlated
31 ZNF17 2 69.0 Weakly correlated
32 ZNF175 2 94.0 Weakly correlated
33 ZNF584 2 99.0 Weakly correlated
34 ZNF587 2 28.9 Moderately correlated
35 ZNF589 2 28.9 Moderately correlated
36 ZNF597 2 94.0 Weakly correlated
37 ZNF28 2 28.9 Moderately correlated
38 ZNF101 2 43.0 Highly correlated
39 ZFP69B 2 99.0 Weakly correlated
40 ZNF75D 2 94.0 Weakly correlated
41 ZNF793 2 99.0 Weakly correlated
42 ZNF816 2 28.9 Moderately correlated
43 ZNF878 2 43.0 Highly correlated
44 ZNF519 2 19.6 Weakly correlated
45 ZNF274 2 99.0 Weakly correlated
46 ZNF429 2 28.9 Moderately correlated
47 ZNF506 2 28.9 Moderately correlated
48 ZNF485 2 94.0 Weakly correlated
49 ZNF264 2 99.0 Weakly correlated
50 ZNF26 1 99.0 Weakly correlated
51 ZNF695 1 28.9 Moderately correlated
52 ZNF700 1 28.9 Moderately correlated
53 ZKSCAN8 1 160.0 Weakly correlated
54 ZNF441 1 43.0 Highly correlated
55 ZNF735 1 28.9 Moderately correlated
56 ZNF417 1 28.9 Moderately correlated
57 ZNF124 1 43.0 Highly correlated
58 ZNF780A 1 43.0 Highly correlated
59 ZNF808 1 19.6 Weakly correlated
60 ZNF350 1 99.0 Weakly correlated
61 ZNF320 1 28.9 Moderately correlated
62 ZFP30 1 99.0 Weakly correlated
63 ZNF684 1 99.0 Weakly correlated
64 ZNF44 1 43.0 Highly correlated
65 ZNF230 1 28.9 Moderately correlated
66 ZNF133 1 99.0 Weakly correlated
67 ZNF468 1 28.9 Moderately correlated
68 ZNF140 1 99.0 Weakly correlated
69 ZNF607 1 43.0 Highly correlated
70 ZNF480 1 43.0 Highly correlated
71 ZNF585A 1 99.0 Weakly correlated
72 ZNF573 1 94.0 Weakly correlated
73 ZNF563 1 28.9 Moderately correlated
74 ZNF561 1 43.0 Highly correlated
75 ZNF510 1 99.0 Weakly correlated
76 ZNF251 1 94.0 Weakly correlated
77 ZNF547 1 74.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 13 15.2 Weakly correlated
2 ZNF263 4 180.0 Weakly correlated
3 ZNF479 4 6.4 Weakly correlated
4 ZIM3 3 87.0 Weakly correlated
5 ZNF610 2 28.9 Moderately correlated
6 ZNF534 2 19.6 Weakly correlated
7 ZNF679 2 28.9 Moderately correlated
8 ZNF684 1 99.0 Weakly correlated
9 ZNF519 1 19.6 Weakly correlated
10 ZNF510 1 99.0 Weakly correlated
11 ZNF701 1 28.9 Moderately correlated
12 ZNF573 1 94.0 Weakly correlated
13 ZFP69B 1 99.0 Weakly correlated
14 ZNF317 1 99.0 Weakly correlated
15 ZNF793 1 99.0 Weakly correlated
16 ZNF780A 1 43.0 Highly correlated
17 ZNF735 1 28.9 Moderately correlated
18 ZNF587 1 28.9 Moderately correlated
19 ZNF878 1 43.0 Highly correlated
20 ZNF197 1 99.0 Weakly correlated
21 ZNF766 1 43.0 Highly correlated
22 ZNF597 1 94.0 Weakly correlated
23 ZNF2 1 99.0 Weakly correlated
24 ZNF26 1 99.0 Weakly correlated
25 ZNF264 1 99.0 Weakly correlated
26 ZNF101 1 43.0 Highly correlated
27 ZNF554 1 99.0 Weakly correlated
28 ZNF468 1 28.9 Moderately correlated
29 ZNF417 1 28.9 Moderately correlated
30 ZNF44 1 43.0 Highly correlated
31 ZNF563 1 28.9 Moderately correlated
32 ZNF549 1 87.0 Weakly correlated
33 ZNF485 1 94.0 Weakly correlated
34 ZNF133 1 99.0 Weakly correlated
35 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats