ZRdb KZFP & Repeats
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LTR_MER65D

  • Name
    MER65D
  • Repbase
    MER65D
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000900
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaaagttgcagataccaggatgaaatcacttttcgtcagacccagacaaantagggccgggaaggcacgaaggaggggagctcatgcttgcatgtctgagataagaactgtttcaaggactttctaaaataaccccacaagaaaaantattcnttctttaggactgcagcaattnnncgnnncagataagatgctctcgaaagaacacttgcccagtaacggcatctccaccaatgaactgacgncaactctggctttgagcctctggaaccaatgaactctgtttctaagcagcttatgtgaacttctccttttgccaataaaagcttccctttacccttccctcnccggatgcacctgtggcttgccatanccgtgcatcccggattataatcctcntttcttattcccgaataaactcaacatatttggagatanttttctctggtgtctttttttttaggttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 79 43.0 Weakly correlated
2 ZNF175 33 94.0 Weakly correlated
3 ZKSCAN8 26 160.0 Weakly correlated
4 ZNF589 25 28.9 Weakly correlated
5 ZNF197 22 99.0 Weakly correlated
6 ZNF382 22 99.0 Weakly correlated
7 ZNF584 20 99.0 Weakly correlated
8 ZKSCAN1 9 160.0 Weakly correlated
9 ZNF18 9 160.0 Weakly correlated
10 ZFP37 5 99.0 Weakly correlated
11 ZNF263 5 180.0 Weakly correlated
12 ZIM3 4 87.0 Highly correlated
13 ZNF394 4 99.0 Weakly correlated
14 ZFP69B 4 99.0 Weakly correlated
15 ZNF2 4 99.0 Weakly correlated
16 ZNF350 3 99.0 Weakly correlated
17 ZNF510 3 99.0 Weakly correlated
18 ZNF695 3 28.9 Weakly correlated
19 ZNF554 2 99.0 Weakly correlated
20 ZNF610 2 28.9 Weakly correlated
21 ZNF429 2 28.9 Weakly correlated
22 ZNF92 2 28.9 Weakly correlated
23 ZNF701 2 28.9 Weakly correlated
24 ZNF324 2 99.0 Weakly correlated
25 ZFP28 2 99.0 Weakly correlated
26 ZNF101 2 43.0 Weakly correlated
27 RBAK 1 99.0 Weakly correlated
28 ZNF343 1 74.0 Moderately correlated
29 ZNF84 1 99.0 Weakly correlated
30 ZNF808 1 19.6 Weakly correlated
31 ZNF793 1 99.0 Weakly correlated
32 ZNF789 1 99.0 Weakly correlated
33 ZNF778 1 74.0 Moderately correlated
34 ZNF182 1 99.0 Weakly correlated
35 ZNF682 1 28.9 Weakly correlated
36 ZNF679 1 28.9 Weakly correlated
37 ZNF214 1 99.0 Weakly correlated
38 ZNF597 1 94.0 Weakly correlated
39 ZNF224 1 69.0 Weakly correlated
40 ZNF264 1 99.0 Weakly correlated
41 ZNF558 1 99.0 Weakly correlated
42 ZNF557 1 15.2 Weakly correlated
43 ZNF274 1 99.0 Weakly correlated
44 ZNF549 1 87.0 Highly correlated
45 ZNF534 1 19.6 Weakly correlated
46 ZNF528 1 43.0 Weakly correlated
47 ZNF30 1 94.0 Weakly correlated
48 ZNF479 1 6.4 Weakly correlated
49 ZNF317 1 99.0 Weakly correlated
50 ZNF425 1 94.0 Weakly correlated
51 ZNF320 1 28.9 Weakly correlated
52 ZNF383 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF589 7 28.9 Weakly correlated
2 ZNF175 7 94.0 Weakly correlated
3 ZNF766 5 43.0 Weakly correlated
4 ZNF197 5 99.0 Weakly correlated
5 ZNF584 4 99.0 Weakly correlated
6 ZIM3 2 87.0 Highly correlated
7 ZFP37 1 99.0 Weakly correlated
8 ZNF263 1 180.0 Weakly correlated
9 ZNF679 1 28.9 Weakly correlated
10 ZNF793 1 99.0 Weakly correlated
11 ZNF350 1 99.0 Weakly correlated
12 ZNF320 1 28.9 Weakly correlated
13 ZNF101 1 43.0 Weakly correlated
14 ZNF528 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF589 28.9 Weakly correlated