ZRdb KZFP & Repeats
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LTR_MER65C

  • Name
    MER65C
  • Repbase
    MER65C
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000899
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaaagttgatcatacgaattgggtcattcttgtcatacccaactaaaaccagagtcgagaggccnagggggaaaaagcactcagggcacataacattgctccaaaatgtaattctctgcaagcccggctgctgaaactgcctgctgtaacctgaaaccagttttatctaatagctgctgaaacaacctgctgcgactctaagactagttttacccaccgccgtcactcaccaatcagagcttgccagctccccaaaactttactagtgccaatgaactttcttncaaaacaatacgtaacatttctcttttttataaaacctccaaccttctctttgttcttcggacataccgaagaccacccggtctgtgtgtatgccccgaattgcaattcttncttcccaaataaaacgttttaaatttagagattcgtctctatattttattttgacttcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 111 99.0 Weakly correlated
2 ZNF780A 42 43.0 Weakly correlated
3 ZNF780B 34 74.0 Highly correlated
4 ZFP37 21 99.0 Weakly correlated
5 ZNF394 20 99.0 Weakly correlated
6 ZNF766 17 43.0 Weakly correlated
7 ZNF263 14 180.0 Weakly correlated
8 ZNF2 14 99.0 Weakly correlated
9 ZNF534 12 19.6 Weakly correlated
10 ZNF610 12 28.9 Weakly correlated
11 ZNF18 11 160.0 Weakly correlated
12 ZNF317 11 99.0 Weakly correlated
13 ZNF554 10 99.0 Weakly correlated
14 ZNF679 9 28.9 Weakly correlated
15 ZKSCAN1 8 160.0 Weakly correlated
16 ZNF549 8 87.0 Weakly correlated
17 ZNF589 8 28.9 Weakly correlated
18 ZNF175 7 94.0 Weakly correlated
19 ZNF324 7 99.0 Weakly correlated
20 ZNF584 7 99.0 Weakly correlated
21 ZNF101 6 43.0 Weakly correlated
22 ZNF695 6 28.9 Weakly correlated
23 ZNF701 6 28.9 Weakly correlated
24 ZNF558 6 99.0 Weakly correlated
25 ZNF75D 6 94.0 Weakly correlated
26 ZNF789 6 99.0 Weakly correlated
27 ZNF92 6 28.9 Weakly correlated
28 ZNF197 5 99.0 Weakly correlated
29 ZIM3 5 87.0 Weakly correlated
30 ZNF479 5 6.4 Weakly correlated
31 ZFP69B 4 99.0 Weakly correlated
32 ZNF793 4 99.0 Weakly correlated
33 ZKSCAN5 3 160.0 Weakly correlated
34 ZKSCAN8 3 160.0 Weakly correlated
35 ZNF705B 3 28.9 Weakly correlated
36 ZNF320 3 28.9 Weakly correlated
37 ZNF528 3 43.0 Weakly correlated
38 ZNF33A 3 99.0 Weakly correlated
39 ZNF425 2 94.0 Weakly correlated
40 ZNF93 2 8.6 Weakly correlated
41 ZNF182 2 99.0 Weakly correlated
42 ZNF723 2 15.2 Weakly correlated
43 ZNF705D 2 28.9 Weakly correlated
44 ZNF257 2 0.0 Weakly correlated
45 ZNF264 2 99.0 Weakly correlated
46 ZNF350 2 99.0 Weakly correlated
47 ZNF429 2 28.9 Weakly correlated
48 ZNF432 2 99.0 Weakly correlated
49 ZNF44 1 43.0 Weakly correlated
50 ZNF230 1 28.9 Weakly correlated
51 ZNF441 1 43.0 Weakly correlated
52 ZNF440 1 28.9 Weakly correlated
53 ZNF735 1 28.9 Weakly correlated
54 ZNF202 1 160.0 Weakly correlated
55 ZNF778 1 74.0 Highly correlated
56 ZNF180 1 99.0 Weakly correlated
57 ZNF169 1 94.0 Weakly correlated
58 ZNF132 1 94.0 Weakly correlated
59 ZNF431 1 28.9 Weakly correlated
60 ZNF816 1 28.9 Weakly correlated
61 ZNF846 1 74.0 Highly correlated
62 ZNF84 1 99.0 Weakly correlated
63 ZNF8 1 99.0 Weakly correlated
64 ZNF597 1 94.0 Weakly correlated
65 ZNF334 1 99.0 Weakly correlated
66 ZNF331 1 94.0 Weakly correlated
67 ZNF557 1 15.2 Weakly correlated
68 ZNF519 1 19.6 Weakly correlated
69 ZNF578 1 15.2 Weakly correlated
70 ZNF583 1 99.0 Weakly correlated
71 ZNF302 1 43.0 Weakly correlated
72 ZNF28 1 28.9 Weakly correlated
73 ZNF547 1 74.0 Highly correlated
74 ZNF274 1 99.0 Weakly correlated
75 ZNF669 1 43.0 Weakly correlated
76 ZNF671 1 94.0 Weakly correlated
77 ZNF490 1 43.0 Weakly correlated
78 ZNF680 1 28.9 Weakly correlated
79 ZNF682 1 28.9 Weakly correlated
80 ZNF34 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF780B 20 74.0 Highly correlated
2 ZNF780A 12 43.0 Weakly correlated
3 ZNF534 8 19.6 Weakly correlated
4 ZNF382 4 99.0 Weakly correlated
5 ZNF610 4 28.9 Weakly correlated
6 ZKSCAN5 3 160.0 Weakly correlated
7 ZNF75D 3 94.0 Weakly correlated
8 ZNF589 2 28.9 Weakly correlated
9 ZNF793 2 99.0 Weakly correlated
10 ZNF263 2 180.0 Weakly correlated
11 ZNF101 2 43.0 Weakly correlated
12 ZNF257 1 0.0 Weakly correlated
13 ZNF695 1 28.9 Weakly correlated
14 ZNF429 1 28.9 Weakly correlated
15 ZNF705B 1 28.9 Weakly correlated
16 ZNF766 1 43.0 Weakly correlated
17 ZNF92 1 28.9 Weakly correlated
18 ZNF197 1 99.0 Weakly correlated
19 ZNF302 1 43.0 Weakly correlated
20 ZNF701 1 28.9 Weakly correlated
21 ZNF705D 1 28.9 Weakly correlated
22 ZNF846 1 74.0 Highly correlated
23 ZNF723 1 15.2 Weakly correlated
24 ZNF584 1 99.0 Weakly correlated
25 ZNF735 1 28.9 Weakly correlated
26 ZFP37 1 99.0 Weakly correlated
27 ZNF669 1 43.0 Weakly correlated
28 ZNF528 1 43.0 Weakly correlated
29 ZNF132 1 94.0 Weakly correlated
30 ZNF554 1 99.0 Weakly correlated
31 ZNF33A 1 99.0 Weakly correlated
32 ZNF671 1 94.0 Weakly correlated
33 ZNF558 1 99.0 Weakly correlated
34 ZNF264 1 99.0 Weakly correlated
35 ZNF320 1 28.9 Weakly correlated
36 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats