ZRdb KZFP & Repeats
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LTR_MER65B

  • Name
    MER65B
  • Repbase
    MER65B
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000898
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaaagttgtcagaatcaaaatggagtcacttgtgtcaaaaaccctgacaaatggagccggggaaggccatgaagggagggctctcacgcacgtatgcctgataacaagaactatcacaaaagactncaaaaaccacaaccttgcacaaaggccatcacaaccttacacaganagntacttatacaagaacacttgcctgacaactgtctcacaagcccagccactgcaagggcctaccgtaactccaagattacaagtcctacctagcaactgctgacactcgccaatcagaactcgccagctcttgtaagacgctgccagcgccaatgaactttctttcaaaacaacttgcgtaacctcctctttccccaataaaaccctaaccttttcctttgttctccggacataccggaggccacctggtctgtgtgtatgtcccggattgcaatcctatttcttgtatattattcccaaataaaaccttttnnncttagagattcgtctctatattttattttgacttcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF175 16 94.0 Weakly correlated
2 ZNF766 16 43.0 Weakly correlated
3 ZNF589 13 28.9 Weakly correlated
4 ZNF584 11 99.0 Weakly correlated
5 ZKSCAN8 8 160.0 Weakly correlated
6 ZNF197 6 99.0 Weakly correlated
7 ZNF382 6 99.0 Weakly correlated
8 ZNF263 4 180.0 Weakly correlated
9 ZIM3 3 87.0 Weakly correlated
10 ZNF18 3 160.0 Weakly correlated
11 ZNF2 2 99.0 Weakly correlated
12 ZNF682 2 28.9 Weakly correlated
13 ZNF394 2 99.0 Weakly correlated
14 ZNF793 2 99.0 Weakly correlated
15 ZFP37 2 99.0 Weakly correlated
16 ZFP69B 2 99.0 Weakly correlated
17 ZNF780B 1 74.0 Highly correlated
18 ZNF93 1 8.6 Weakly correlated
19 ZNF786 1 99.0 Weakly correlated
20 ZNF75D 1 94.0 Weakly correlated
21 ZNF695 1 28.9 Weakly correlated
22 ZNF808 1 19.6 Weakly correlated
23 ZNF679 1 28.9 Weakly correlated
24 ZNF597 1 94.0 Weakly correlated
25 ZNF554 1 99.0 Weakly correlated
26 ZNF519 1 19.6 Weakly correlated
27 ZNF483 1 99.0 Weakly correlated
28 ZNF479 1 6.4 Weakly correlated
29 ZNF440 1 28.9 Weakly correlated
30 ZNF350 1 99.0 Weakly correlated
31 ZNF317 1 99.0 Weakly correlated
32 ZNF273 1 28.9 Weakly correlated
33 ZNF251 1 94.0 Weakly correlated
34 ZNF101 1 43.0 Weakly correlated
35 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 2 180.0 Weakly correlated
2 ZIM3 1 87.0 Weakly correlated
3 ZNF101 1 43.0 Weakly correlated
4 ZNF175 1 94.0 Weakly correlated
5 ZNF793 1 99.0 Weakly correlated
6 ZNF780B 1 74.0 Highly correlated
7 ZNF75D 1 94.0 Weakly correlated
8 ZNF483 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats