ZRdb KZFP & Repeats
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LTR_MER65A

  • Name
    MER65A
  • Repbase
    MER65A
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000897
Description :

MER65A has 4 bp TSDs. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaaagttgtcagaatcaaaatggagtcactngtgttaaaaaccctgacaaatagagccggggaaggccatgaagagagggttctcacgcntgnatgcctgataacaaaaactatcacaaaagactgcaaaaaccacaaccttgcacaaaggccatcgcaaccttacacanaaaaatacttctgcgaggacatctgcccagcaactgcctgtccaacctcggactggcgtcacccttgttattgatccttgtagccaaggataattatctcaaaacaattatgtaatcctcctcatttttcctttaaaaacctttgtcttcctttacctccctgaatacgcacatagtttactatggcacgcgtattcccattgcaatgccctattcccgaataaatatcattttcttttagagagcctctctgtttgttatttaggttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 77 43.0 Weakly correlated
2 ZNF175 53 94.0 Weakly correlated
3 ZNF589 43 28.9 Weakly correlated
4 ZNF382 41 99.0 Weakly correlated
5 ZNF197 32 99.0 Weakly correlated
6 ZKSCAN8 29 160.0 Weakly correlated
7 ZNF584 28 99.0 Weakly correlated
8 ZNF679 28 28.9 Weakly correlated
9 ZNF394 26 99.0 Weakly correlated
10 ZNF263 18 180.0 Weakly correlated
11 ZNF789 15 99.0 Weakly correlated
12 ZNF2 12 99.0 Weakly correlated
13 ZNF680 10 28.9 Weakly correlated
14 ZFP37 9 99.0 Weakly correlated
15 ZIM3 9 87.0 Weakly correlated
16 ZFP69B 9 99.0 Weakly correlated
17 ZNF101 7 43.0 Weakly correlated
18 ZNF610 7 28.9 Weakly correlated
19 ZNF695 5 28.9 Weakly correlated
20 ZNF251 5 94.0 Weakly correlated
21 ZKSCAN1 5 160.0 Weakly correlated
22 ZNF597 5 94.0 Weakly correlated
23 ZNF324 4 99.0 Weakly correlated
24 ZNF528 4 43.0 Weakly correlated
25 ZNF558 4 99.0 Weakly correlated
26 ZNF182 4 99.0 Weakly correlated
27 ZNF701 4 28.9 Weakly correlated
28 ZNF287 3 99.0 Weakly correlated
29 ZNF274 3 99.0 Weakly correlated
30 ZNF18 3 160.0 Weakly correlated
31 ZNF425 3 94.0 Weakly correlated
32 ZNF554 3 99.0 Weakly correlated
33 ZNF320 2 28.9 Weakly correlated
34 ZNF486 2 8.6 Weakly correlated
35 ZNF682 2 28.9 Weakly correlated
36 ZNF723 2 15.2 Weakly correlated
37 ZNF778 2 74.0 Highly correlated
38 ZFP57 2 87.0 Weakly correlated
39 ZNF8 2 99.0 Weakly correlated
40 ZNF845 2 28.9 Weakly correlated
41 ZNF28 2 28.9 Weakly correlated
42 ZNF317 2 99.0 Weakly correlated
43 ZNF441 2 43.0 Weakly correlated
44 ZNF479 2 6.4 Weakly correlated
45 ZNF93 1 8.6 Weakly correlated
46 ZNF786 1 99.0 Weakly correlated
47 ZNF816 1 28.9 Weakly correlated
48 ZNF735 1 28.9 Weakly correlated
49 ZNF730 1 19.6 Weakly correlated
50 ZNF81 1 99.0 Weakly correlated
51 ZNF823 1 43.0 Weakly correlated
52 ZNF780A 1 43.0 Weakly correlated
53 ZNF84 1 99.0 Weakly correlated
54 ZNF707 1 74.0 Highly correlated
55 ZNF705D 1 28.9 Weakly correlated
56 ZNF674 1 99.0 Weakly correlated
57 ZNF671 1 94.0 Weakly correlated
58 ZNF519 1 19.6 Weakly correlated
59 ZNF471 1 94.0 Weakly correlated
60 ZNF429 1 28.9 Weakly correlated
61 ZNF420 1 94.0 Weakly correlated
62 ZNF304 1 99.0 Weakly correlated
63 ZNF284 1 43.0 Weakly correlated
64 ZNF273 1 28.9 Weakly correlated
65 ZNF264 1 99.0 Weakly correlated
66 ZNF248 1 99.0 Weakly correlated
67 ZNF169 1 94.0 Weakly correlated
68 ZNF141 1 43.0 Weakly correlated
69 ZNF136 1 74.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 9 43.0 Weakly correlated
2 ZIM3 6 87.0 Weakly correlated
3 ZNF680 5 28.9 Weakly correlated
4 ZNF679 5 28.9 Weakly correlated
5 ZNF695 3 28.9 Weakly correlated
6 ZNF789 3 99.0 Weakly correlated
7 ZNF382 2 99.0 Weakly correlated
8 ZNF723 2 15.2 Weakly correlated
9 ZNF589 2 28.9 Weakly correlated
10 ZNF287 2 99.0 Weakly correlated
11 ZNF701 1 28.9 Weakly correlated
12 ZNF780A 1 43.0 Weakly correlated
13 ZNF429 1 28.9 Weakly correlated
14 ZKSCAN8 1 160.0 Weakly correlated
15 ZNF197 1 99.0 Weakly correlated
16 ZNF554 1 99.0 Weakly correlated
17 ZFP37 1 99.0 Weakly correlated
18 ZNF425 1 94.0 Weakly correlated
19 ZNF18 1 160.0 Weakly correlated
20 ZNF610 1 28.9 Weakly correlated
21 ZNF175 1 94.0 Weakly correlated
22 ZNF597 1 94.0 Weakly correlated
23 ZNF182 1 99.0 Weakly correlated
24 ZNF528 1 43.0 Weakly correlated
25 ZKSCAN1 1 160.0 Weakly correlated
26 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats