ZRdb KZFP & Repeats
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LTR_MER65-INT

  • Name
    MER65-INT
  • Repbase
    MER65I
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000901
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
atcaaaacggtgtcagaagtgggaccgaagtgagctcacctcggacggatcntggcccctggaatcgagtgcggtactnactgagccctttgngctctccgcttccgcgagttccttttctgccctggtgagtcttctctcaggttctnagnctccctccttttggtgagtnctttttnactttattcgggatctggtttggttanaaggccgccttaaataaaggaccttacatccctcctgggatnataagtcttttctggcaagtcctttctggtataaagacaagtgtccttctggnttgagtactctggtttntattctgtctgtgaggcatntnttttctggtnaattcacttttgtttctttntgnctnctgtgaggcatgtcttttctggtgaattcacttttgnttctncgtgcctagtttaatattttgtttgatctgcacgcctgggttaaaatttttgtgaacactcttattttggtttcattttggtttggttacgcgcgtctgtaaatgatttggctcttttttnccttgcttgtttctgaaaatcttccgagagcaaaaataaacattctaaatggtgggcgcgggatggctaattaaaagccactagggcggtcgccaccatctaaaacaccggtccaaactcctgacattccctgacaggatttataggattttctttgctctcgagagaaaaaagaatgggattctcaaaattctaaggcatgccaggttttctgggactccagccggctacatattatggcccgttctcgtgcacatttttaaactgatgggcaaattacatcaaggaaaattcagagctcaaatggtcattatctntctaagcttnttaaaaactgcaaccaactatagagttaacatgtagagccttcntaagttctctatctctctnttttttttctgcctactttgaatctgctgacttttctgctggtgttgagataaactcactgcttatggcattccagccaagattttttaaaaaaagtcttaaagggctttcaaattaatggctttacaaattacaacagctccatggcaaccaacaacctagacaccttttggaaatgtaaatttaggtttgcctgactaacaattgcttagggtgatggaacagttaattgaaggattgatantctaaaaagaaaagaactagataaatgtttataaaagttannggctctcagatcaaacaggtcaaaatcttgagctcagagcaataatataaggtatctctgtccggcataaaaattgctttgtctgccacgcaggggccagaaaaagccgaaaaaaaaaaanaactgcaaanatctttctnaaaantgccttncccgcgttgactagtcaaaccagacnaacaaaagatagatttgttactaattcaaggctacttggagattttgtttttcttatacaattcagccagtcctagctaaaatgtaaacatttgaaaatttaaccnctaaactcatttgaaactaaaaaaagganaaaaaggtttttaaaaatcaaactgccatggaaactgctttacccaaaattttggtccacagccttcattagattacctatcggggcaaataaagtttagccatgtgaacaggtcccattttgtcagaaatataatttggatccaactgtcnttttataaaccggtgagtttgtattactatgttttactgtctcatgactaaaattctaaaatgaaagctataagatctttgtgtgtgtatgtatntgtgtttatgtatgtttacacgtattatatgtgttgtgtctacatggtaaaatctggcgtagtcggccagaaatcccttnnaggaattctattcagattggcttagataaatgagcgctcatataaaatatatagtaattaacccaaatgccttttagttcacgtgacttaagtaaatctttgataaataagctggttttaaanttgttggtaaaataaaaatagaaatgtcttcagaattgtcagcatacatttttgcctgggtttactggtcagacagntttatatttgtctctgctagatgttttaaggtnataaaactataaacccagcctaaaaacagaatgatctttgtttgtgtaattctttgataagnntaagactaatttaatattgttggtttaatgaaaacagctgtatcttctgagttatcggcaaaatacccatatatttaactttaaggttcttacttaggtgaacacctgatattcacaggctataaaaatggttaacagggaaataacttgaaatgatgactagctttgtctaatatctcagttttcataagtaatctaggtataattgttaaaaataaataaattaggtaaatgtaaatgggataaacgtttataaatgaacttttcatgtaatttgaaatcttaaagttatgttatgttaaattaaatgatactcattaaatgtctgggtcatttccaaaattatatgaaaagcattntcaaatnataagtggtaanngatgctaaaccttctctaagttatatttatgggtatgttattgatatgantgttccaaaaattgtatgaaattcctagaaatctaatatgtcataantncggtcatnatgtcatatgccacagaagtaacnaaatttctntgtgagctgtgttatcataatgaactctcatcagatttttaaccatagtcattttaaatctttgtcattcacagacattgttttgattcttctctnaaagcatttgcaatcactacatccaaaattgcttctttttcaaggagatttatggaaaagacnctgacaagtactcttgaatacaagtttctgataactttaagatcataccactgactgnctaagaactntccaaaactctaacgaanaggctgatgncttcatgaaactgctnnccaananaccaagcagaaaaaaacattaatttcattgaaataattgataactaatgaggataatgtttttnatgatttttatttgaaaatttgctgattctttanntaaatgttttgttttccagatttanggaanttttttcttttaagctatctatagcttacagcaatttggtaaagtatacttttgtgaaaacaaaaattgaaacatttacttttnctccctacctgatcgccccagaattnggaaactattcatgagtattcntatntttatggcaatacagttatttgcacaagttcagtaagaatctgctcnctctttataacaggacacanttggaaacattggttatattaccaaggctttgactgggatgtcatatttgagatagaatgaaccnatangnactgcaggncaaagtctgaagtcggccttggtttnnggcttcctagcctcanagaggtttntaaaagtttaatctgagattccttataaaaacttcnagcaaagnaaactttaaaagagagcctacgtggtccattgnctaccctngtnnnacttacgtaaanaatcaggccaagtttgatgagactaaacctattttgcaaacaaatttgtcctactgngattatctttggtagaaatagggatgnctatagagagaaaaattatgtttctaaagaaaaactatagtacacctgttattagattgtagccctgtncattgttttcgagttcttattatctacctgtagactggactagatcctgaattcttctagnttcctccaatccaactttctcccatggaattactaagaacgagaactgctctgttcctgaagccctataagctgaagctggacaactcgatgtaaatttcaagggacaagntctcgtgcctgatgtatgggccacacagagagttcaccaaaccgcccgatgccataaccagagacattcaaactgcaaaccaggacgagaagttgacgncttcacgctgtggacagcttttcccaagacgtcggaacaagactccntatcataatgagactcttacccctcttaattttccttncttatgcctacctttttcacttggcaggataatgntgtaattaaaatttcacaatcagtagcttctgcgggtaacttgacagaacctgacctaagagatcctttagtccacctagtgggtaactttggcaacatccctaatacaactgttgctcactctgctttaattcaacccagtcatgggatactagatgataaaattgctctatattatctattggttaaataaggaaatgtctgtgctattgctaatactacatgctgtacctggataaattcctctgggaaagttgagacccnatatacacaaaataagaaaacannnnnnnnnacaggccacatnggttacaacaggtctcacctaattccctatggtcatttgatttattcaattggttgcctttaagcctaggttcatggctcaaaaccattatgcaaactgggattgtcatattactattaattttactttgtattttccttttaaaactttgtatctgttacttgttaaatttttgcagaagtacaactcctaacagaataatgctggcccagcactttgagatgatagcnaaaagactacggaacagacaaaattgaacttaataatggactccaggtagacttagcctgagagccactcccttcaaacctcccttttgctcaaatgtggctaaaagggttttgacactgactcctagtcgccaatcactccctcncaatgtgggaccagaccagnccaanccgggacaggtccatcccggcaccgagggacaatcaaaacctaactacaggatgattgatcagcgatgctttcggagaaagatcttgatcaaaagggggaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 61 99.0 Weakly correlated
2 ZNF766 24 43.0 Weakly correlated
3 ZNF317 15 99.0 Weakly correlated
4 ZNF394 14 99.0 Weakly correlated
5 ZNF789 14 99.0 Weakly correlated
6 ZNF263 14 180.0 Weakly correlated
7 ZFP37 12 99.0 Weakly correlated
8 ZNF680 11 28.9 Weakly correlated
9 ZNF175 11 94.0 Weakly correlated
10 ZNF589 10 28.9 Weakly correlated
11 ZNF547 9 74.0 Moderately correlated
12 ZNF101 8 43.0 Weakly correlated
13 ZNF534 7 19.6 Weakly correlated
14 ZNF679 7 28.9 Weakly correlated
15 ZNF723 6 15.2 Weakly correlated
16 ZNF705B 6 28.9 Weakly correlated
17 ZNF554 5 99.0 Weakly correlated
18 ZNF558 5 99.0 Weakly correlated
19 ZNF584 5 99.0 Weakly correlated
20 ZNF2 5 99.0 Weakly correlated
21 ZFP69B 5 99.0 Weakly correlated
22 ZKSCAN1 5 160.0 Weakly correlated
23 ZNF197 4 99.0 Weakly correlated
24 ZNF485 4 94.0 Weakly correlated
25 ZNF441 4 43.0 Weakly correlated
26 ZIM3 4 87.0 Highly correlated
27 ZNF324 4 99.0 Weakly correlated
28 ZNF169 4 94.0 Weakly correlated
29 ZNF429 3 28.9 Weakly correlated
30 ZNF641 3 99.0 Weakly correlated
31 ZNF75D 3 94.0 Weakly correlated
32 ZNF443 3 19.6 Weakly correlated
33 ZFP57 3 87.0 Highly correlated
34 ZNF878 2 43.0 Weakly correlated
35 ZNF701 2 28.9 Weakly correlated
36 ZNF705D 2 28.9 Weakly correlated
37 ZNF735 2 28.9 Weakly correlated
38 ZNF707 2 74.0 Moderately correlated
39 ZNF92 2 28.9 Weakly correlated
40 ZNF528 2 43.0 Weakly correlated
41 ZNF18 2 160.0 Weakly correlated
42 ZNF264 2 99.0 Weakly correlated
43 ZNF273 2 28.9 Weakly correlated
44 ZNF182 2 99.0 Weakly correlated
45 ZNF17 2 69.0 Weakly correlated
46 ZNF43 2 43.0 Weakly correlated
47 ZKSCAN8 2 160.0 Weakly correlated
48 ZNF486 2 8.6 Weakly correlated
49 ZNF490 2 43.0 Weakly correlated
50 ZNF793 1 99.0 Weakly correlated
51 ZNF140 1 99.0 Weakly correlated
52 ZNF84 1 99.0 Weakly correlated
53 ZNF780A 1 43.0 Weakly correlated
54 ZNF160 1 74.0 Moderately correlated
55 ZNF91 1 6.0 Weakly correlated
56 ZFP28 1 99.0 Weakly correlated
57 ZNF202 1 160.0 Weakly correlated
58 ZNF274 1 99.0 Weakly correlated
59 ZNF320 1 28.9 Weakly correlated
60 ZNF334 1 99.0 Weakly correlated
61 ZNF669 1 43.0 Weakly correlated
62 ZNF597 1 94.0 Weakly correlated
63 ZNF440 1 28.9 Weakly correlated
64 ZNF585A 1 99.0 Weakly correlated
65 ZNF479 1 6.4 Weakly correlated
66 ZNF506 1 28.9 Weakly correlated
67 ZNF519 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF789 6 99.0 Weakly correlated
2 ZNF534 6 19.6 Weakly correlated
3 ZNF723 4 15.2 Weakly correlated
4 ZNF101 3 43.0 Weakly correlated
5 ZNF680 3 28.9 Weakly correlated
6 ZNF382 3 99.0 Weakly correlated
7 ZNF43 2 43.0 Weakly correlated
8 ZNF273 2 28.9 Weakly correlated
9 ZNF263 2 180.0 Weakly correlated
10 ZNF485 2 94.0 Weakly correlated
11 ZNF169 2 94.0 Weakly correlated
12 ZKSCAN1 2 160.0 Weakly correlated
13 ZIM3 2 87.0 Highly correlated
14 ZNF701 1 28.9 Weakly correlated
15 ZNF18 1 160.0 Weakly correlated
16 ZNF75D 1 94.0 Weakly correlated
17 ZNF766 1 43.0 Weakly correlated
18 ZNF528 1 43.0 Weakly correlated
19 ZNF589 1 28.9 Weakly correlated
20 ZNF735 1 28.9 Weakly correlated
21 ZNF317 1 99.0 Weakly correlated
22 ZFP28 1 99.0 Weakly correlated
23 ZNF264 1 99.0 Weakly correlated
24 ZNF202 1 160.0 Weakly correlated
25 ZNF793 1 99.0 Weakly correlated
26 ZNF705D 1 28.9 Weakly correlated
27 ZNF2 1 99.0 Weakly correlated
28 ZNF140 1 99.0 Weakly correlated
29 ZFP57 1 87.0 Highly correlated
30 ZFP37 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF534 19.6 Weakly correlated