ZRdb KZFP & Repeats
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LTR_MER61F

  • Name
    MER61F
  • Repbase
    MER61F
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000888
Description :

MER61F was originally called LTR20C. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagggagaagaaaagnangaaaaatcagttgggtaaacagctaaggctggtcctcggagaagcagcctgcctgaaaaatcacagctacaggcaaaaatagagcagcctggggaaaannnnnnnnnnnnnnnnnctcaggctgcacctgcacagataagccgcagataagcaaggcagggtccagcacagaagccttttgttctttgtgtgattagcgagctcccaggaaaaagtttcctccccttttcaggcatatacacggtgggctccgtgggaacttgcacagggaggaggggggcttacctaaaacaaacccacagttatacaaacaagagaagcngcgctttgtgcttgcctagagacatacccacagctgcataagataaggggagttgcgcagacagctttacngataagagaagttactcaaacagctacagagatgagaggagtttcttataaaagcttttggattcaactgtaaaaacggcaacccactcgggctcccctctccgctgcggagagctttcttctttcgcttattaaactttcgctccaacctcaccctttgtgtccacgctccttaattttcttggtcgtgagacgangagctcngggtaacacctcagacaacgagaaactgctacattgnggtgcattggcgagactgcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 290 28.9 Moderately correlated
2 ZNF766 40 43.0 Highly correlated
3 ZNF197 22 99.0 Weakly correlated
4 ZKSCAN8 17 160.0 Weakly correlated
5 ZNF584 16 99.0 Weakly correlated
6 ZNF589 16 28.9 Moderately correlated
7 ZNF175 15 94.0 Weakly correlated
8 ZNF681 12 28.9 Moderately correlated
9 ZKSCAN1 11 160.0 Weakly correlated
10 ZNF486 10 8.6 Weakly correlated
11 ZNF382 10 99.0 Weakly correlated
12 ZNF263 7 180.0 Weakly correlated
13 ZNF18 6 160.0 Weakly correlated
14 ZNF597 4 94.0 Weakly correlated
15 ZNF780A 4 43.0 Highly correlated
16 ZNF274 3 99.0 Weakly correlated
17 ZIM3 3 87.0 Weakly correlated
18 ZNF92 2 28.9 Moderately correlated
19 ZNF558 2 99.0 Weakly correlated
20 ZNF528 2 43.0 Highly correlated
21 ZFP69B 2 99.0 Weakly correlated
22 ZFP37 2 99.0 Weakly correlated
23 ZNF182 2 99.0 Weakly correlated
24 ZNF429 2 28.9 Moderately correlated
25 ZNF394 2 99.0 Weakly correlated
26 ZNF324 2 99.0 Weakly correlated
27 ZNF257 2 0.0 Weakly correlated
28 ZNF2 2 99.0 Weakly correlated
29 ZNF667 1 99.0 Weakly correlated
30 ZNF84 1 99.0 Weakly correlated
31 ZNF792 1 94.0 Weakly correlated
32 ZNF251 1 94.0 Weakly correlated
33 ZNF707 1 74.0 Weakly correlated
34 ZNF701 1 28.9 Moderately correlated
35 ZNF695 1 28.9 Moderately correlated
36 ZNF671 1 94.0 Weakly correlated
37 ZNF485 1 94.0 Weakly correlated
38 ZNF641 1 99.0 Weakly correlated
39 ZNF611 1 19.6 Weakly correlated
40 ZNF610 1 28.9 Moderately correlated
41 ZNF585A 1 99.0 Weakly correlated
42 ZNF441 1 43.0 Highly correlated
43 ZNF534 1 19.6 Weakly correlated
44 ZNF468 1 28.9 Moderately correlated
45 ZNF506 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 60 28.9 Moderately correlated
2 ZNF197 13 99.0 Weakly correlated
3 ZNF589 10 28.9 Moderately correlated
4 ZNF584 9 99.0 Weakly correlated
5 ZNF175 9 94.0 Weakly correlated
6 ZNF766 7 43.0 Highly correlated
7 ZNF681 5 28.9 Moderately correlated
8 ZNF780A 4 43.0 Highly correlated
9 ZIM3 3 87.0 Weakly correlated
10 ZNF263 3 180.0 Weakly correlated
11 ZNF429 2 28.9 Moderately correlated
12 ZNF257 2 0.0 Weakly correlated
13 ZNF792 1 94.0 Weakly correlated
14 ZNF671 1 94.0 Weakly correlated
15 ZNF528 1 43.0 Highly correlated
16 ZNF382 1 99.0 Weakly correlated
17 ZNF641 1 99.0 Weakly correlated
18 ZNF695 1 28.9 Moderately correlated
19 ZNF468 1 28.9 Moderately correlated
20 ZNF597 1 94.0 Weakly correlated
21 ZNF18 1 160.0 Weakly correlated
22 ZKSCAN8 1 160.0 Weakly correlated
23 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF197 99.0 Weakly correlated
3 ZNF584 99.0 Weakly correlated
4 ZNF589 28.9 Moderately correlated
5 ZNF766 43.0 Highly correlated