ZRdb KZFP & Repeats
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LTR_MER61E

  • Name
    MER61E
  • Repbase
    MER61E
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000887
Description :

MER61E was originally called LTR20B. It has 4 bp TSDs. Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagagaggagaaaggaagaaaccggtcaggcaggcagttagggtgggtcctcggttgaattctttcaaacaaaagaacagcctgcaggcacagataagggaacttgcacaggggggcttgcctaagacatgcccacagccgcacagataagaaaggctacacaggtgacttgcccagacatgcccgcaatggaaaattccgtcccctgacacatgcgcagtaaggggaacaaagcaatatggagtaactcaagctaagggcccgcatgcgcactaggaggacggggtggagctaccagaaattcgcgccttatgcaaatgagacgcccagccctcatcggtttcttataaaagcctttgcattcaactgtaaaaacggcaaccctcttccgggccccctctccgcggcggagagctttcttctttcgcttattaaactttcgctccaacctcaccctttgtgtccacgctccttaattctcttggtcgtgagacaaagaactccgggtgatacctcacaacgngnnantgagagactgctacattgtggtgcattggcgagactaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 378 28.9 Moderately correlated
2 ZNF780A 100 43.0 Highly correlated
3 ZNF766 93 43.0 Highly correlated
4 ZNF589 65 28.9 Moderately correlated
5 ZKSCAN8 65 160.0 Weakly correlated
6 ZNF175 60 94.0 Weakly correlated
7 ZNF197 59 99.0 Weakly correlated
8 ZNF584 58 99.0 Weakly correlated
9 ZNF92 56 28.9 Moderately correlated
10 ZKSCAN1 32 160.0 Weakly correlated
11 ZNF18 22 160.0 Weakly correlated
12 ZNF486 19 8.6 Weakly correlated
13 ZNF681 18 28.9 Moderately correlated
14 ZNF274 18 99.0 Weakly correlated
15 ZNF382 16 99.0 Weakly correlated
16 ZNF677 14 99.0 Weakly correlated
17 ZNF568 8 99.0 Weakly correlated
18 ZNF610 6 28.9 Moderately correlated
19 ZNF251 5 94.0 Weakly correlated
20 ZNF263 4 180.0 Weakly correlated
21 ZNF723 3 15.2 Weakly correlated
22 ZNF534 3 19.6 Weakly correlated
23 ZFP69B 3 99.0 Weakly correlated
24 ZNF793 3 99.0 Weakly correlated
25 ZNF679 3 28.9 Moderately correlated
26 ZNF75D 3 94.0 Weakly correlated
27 ZNF701 3 28.9 Moderately correlated
28 ZNF736 2 43.0 Highly correlated
29 ZNF510 2 99.0 Weakly correlated
30 ZNF506 2 28.9 Moderately correlated
31 ZFP57 2 87.0 Weakly correlated
32 ZNF28 2 28.9 Moderately correlated
33 ZFP37 2 99.0 Weakly correlated
34 ZNF101 2 43.0 Highly correlated
35 ZNF479 2 6.4 Weakly correlated
36 ZNF264 1 99.0 Weakly correlated
37 ZNF480 1 43.0 Highly correlated
38 ZNF823 1 43.0 Highly correlated
39 ZFP69 1 99.0 Weakly correlated
40 ZIM3 1 87.0 Weakly correlated
41 ZNF468 1 28.9 Moderately correlated
42 ZNF10 1 99.0 Weakly correlated
43 ZNF133 1 99.0 Weakly correlated
44 ZNF727 1 19.6 Weakly correlated
45 ZNF140 1 99.0 Weakly correlated
46 ZNF705B 1 28.9 Moderately correlated
47 ZNF182 1 99.0 Weakly correlated
48 ZNF230 1 28.9 Moderately correlated
49 ZNF394 1 99.0 Weakly correlated
50 ZNF284 1 43.0 Highly correlated
51 ZNF429 1 28.9 Moderately correlated
52 ZNF2 1 99.0 Weakly correlated
53 ZNF607 1 43.0 Highly correlated
54 ZNF597 1 94.0 Weakly correlated
55 ZNF333 1 99.0 Weakly correlated
56 ZNF334 1 99.0 Weakly correlated
57 ZNF347 1 43.0 Highly correlated
58 ZNF554 1 99.0 Weakly correlated
59 ZNF350 1 99.0 Weakly correlated
60 ZNF528 1 43.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF780A 91 43.0 Highly correlated
2 ZNF680 68 28.9 Moderately correlated
3 ZNF589 30 28.9 Moderately correlated
4 ZNF584 28 99.0 Weakly correlated
5 ZNF175 28 94.0 Weakly correlated
6 ZNF197 26 99.0 Weakly correlated
7 ZNF681 18 28.9 Moderately correlated
8 ZNF766 12 43.0 Highly correlated
9 ZNF677 4 99.0 Weakly correlated
10 ZKSCAN1 3 160.0 Weakly correlated
11 ZKSCAN8 3 160.0 Weakly correlated
12 ZNF18 2 160.0 Weakly correlated
13 ZNF251 2 94.0 Weakly correlated
14 ZNF610 1 28.9 Moderately correlated
15 ZFP69B 1 99.0 Weakly correlated
16 ZNF75D 1 94.0 Weakly correlated
17 ZNF264 1 99.0 Weakly correlated
18 ZNF429 1 28.9 Moderately correlated
19 ZNF479 1 6.4 Weakly correlated
20 ZNF480 1 43.0 Highly correlated
21 ZNF534 1 19.6 Weakly correlated
22 ZNF486 1 8.6 Weakly correlated
23 ZNF723 1 15.2 Weakly correlated
24 ZNF92 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Weakly correlated
2 ZNF589 28.9 Moderately correlated
3 ZNF680 28.9 Moderately correlated
4 ZNF766 43.0 Highly correlated
5 ZNF780A 43.0 Highly correlated