ZRdb KZFP & Repeats
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LTR_MER61D

  • Name
    MER61D
  • Repbase
    MER61D
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000886
Description :

MER61D was refined and renamed from LTR20. It is related to MER4-int,MER41-int, MER57-int and MER65-int. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaaggagttagccagcttgctttaggcagacagtaagggaagggtccccggagaacctccgacccgccccacaagtgcttacaccagatgttttgtgcagataagggaacttgcacagggggcttgcctaaacatgcccgcggtgaaaaattccgtcccttaacacatgcgcagtaagggaaataaatcaatgtggagtggctcagactaagggcccgcatgcgcactgggagaatggggtggagccaccaggaattcgcgccttatgcaggnggggagcccggcctcntcagctcgtgtgtggnggccctggtattcaactgtgaggngggcaaccggnaacctgcttncaggacccctctctttgctgagagctttcctttcgcttaataaattctactccacctcactcttcgatgtgtccgcgtgcctaattcttcctggtcgtgagacaagaacccggacctagctgagctaaggagcaaaaaatcctgcatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 614 28.9 Moderately correlated
2 ZNF382 14 99.0 Weakly correlated
3 ZNF766 12 43.0 Highly correlated
4 ZNF610 8 28.9 Moderately correlated
5 ZNF589 7 28.9 Moderately correlated
6 ZKSCAN1 6 160.0 Weakly correlated
7 ZKSCAN8 6 160.0 Weakly correlated
8 ZNF584 6 99.0 Weakly correlated
9 ZNF486 6 8.6 Weakly correlated
10 ZNF394 6 99.0 Weakly correlated
11 ZNF175 5 94.0 Weakly correlated
12 ZNF558 5 99.0 Weakly correlated
13 ZNF75D 4 94.0 Weakly correlated
14 ZNF140 4 99.0 Weakly correlated
15 ZNF506 4 28.9 Moderately correlated
16 ZNF554 3 99.0 Weakly correlated
17 ZNF528 3 43.0 Highly correlated
18 ZFP37 3 99.0 Weakly correlated
19 ZNF2 3 99.0 Weakly correlated
20 ZNF101 3 43.0 Highly correlated
21 ZFP69B 3 99.0 Weakly correlated
22 ZNF251 3 94.0 Weakly correlated
23 ZNF324 2 99.0 Weakly correlated
24 ZIM3 2 87.0 Weakly correlated
25 ZNF679 2 28.9 Moderately correlated
26 ZNF671 2 94.0 Weakly correlated
27 ZNF669 2 43.0 Highly correlated
28 ZNF641 2 99.0 Weakly correlated
29 ZNF18 2 160.0 Weakly correlated
30 ZNF197 2 99.0 Weakly correlated
31 ZNF547 2 74.0 Weakly correlated
32 ZNF534 2 19.6 Weakly correlated
33 ZNF792 2 94.0 Weakly correlated
34 ZNF263 2 180.0 Weakly correlated
35 ZNF441 2 43.0 Highly correlated
36 ZNF28 2 28.9 Moderately correlated
37 ZFP14 1 99.0 Weakly correlated
38 ZNF765 1 8.6 Weakly correlated
39 ZNF736 1 43.0 Highly correlated
40 ZNF793 1 99.0 Weakly correlated
41 ZNF707 1 74.0 Weakly correlated
42 ZNF823 1 43.0 Highly correlated
43 ZNF317 1 99.0 Weakly correlated
44 ZNF8 1 99.0 Weakly correlated
45 ZNF701 1 28.9 Moderately correlated
46 ZNF616 1 43.0 Highly correlated
47 ZNF597 1 94.0 Weakly correlated
48 ZNF169 1 94.0 Weakly correlated
49 ZNF562 1 28.9 Moderately correlated
50 ZNF230 1 28.9 Moderately correlated
51 ZNF257 1 0.0 Weakly correlated
52 ZNF485 1 94.0 Weakly correlated
53 ZNF479 1 6.4 Weakly correlated
54 ZNF334 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 125 28.9 Moderately correlated
2 ZNF584 4 99.0 Weakly correlated
3 ZNF75D 3 94.0 Weakly correlated
4 ZNF589 3 28.9 Moderately correlated
5 ZNF175 2 94.0 Weakly correlated
6 ZNF197 2 99.0 Weakly correlated
7 ZKSCAN1 2 160.0 Weakly correlated
8 ZIM3 2 87.0 Weakly correlated
9 ZNF251 1 94.0 Weakly correlated
10 ZNF263 1 180.0 Weakly correlated
11 ZNF486 1 8.6 Weakly correlated
12 ZNF671 1 94.0 Weakly correlated
13 ZFP14 1 99.0 Weakly correlated
14 ZNF382 1 99.0 Weakly correlated
15 ZNF793 1 99.0 Weakly correlated
16 ZNF169 1 94.0 Weakly correlated
17 ZKSCAN8 1 160.0 Weakly correlated
18 ZNF610 1 28.9 Moderately correlated
19 ZNF679 1 28.9 Moderately correlated
20 ZNF528 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats