ZRdb KZFP & Repeats
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LTR_MER61C

  • Name
    MER61C
  • Repbase
    MER61C
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000885
Description :

MER61C has 4 bp TSDs. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatagatgcaggaggcagataagggagggtccccggagaatctccgacccgccccacaagtgtttacatcagatgcttttgtgcagatgagggaacctgcccagggccttgtctgggcatgcccgcaacggactgggggcccgcctgcgcactgggggaatggggtggagccaccgggaattcgcgccttatgcagggggaggagcctggcctcttcagctcntgtgtggtggcctggtattcaatctgtgaggtgggagcctgttggcaggaccccctctctctttgctgagagctttttcttttccttttcgcccaataaattccgctctcctcacccttcaatgtgtccgcgtgcctaatttttcctggtcgtgagacaagaacccggattttagctgaactaaggagcaaaaatcctgcatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 338 28.9 Moderately correlated
2 ZNF382 42 99.0 Weakly correlated
3 ZNF263 17 180.0 Weakly correlated
4 ZNF394 14 99.0 Weakly correlated
5 ZNF766 13 43.0 Highly correlated
6 ZNF18 8 160.0 Weakly correlated
7 ZNF554 7 99.0 Weakly correlated
8 ZNF558 6 99.0 Weakly correlated
9 ZNF197 5 99.0 Weakly correlated
10 ZNF679 5 28.9 Moderately correlated
11 ZNF2 5 99.0 Weakly correlated
12 ZNF589 5 28.9 Moderately correlated
13 ZNF584 4 99.0 Weakly correlated
14 ZNF793 4 99.0 Weakly correlated
15 ZNF486 4 8.6 Weakly correlated
16 ZNF75D 4 94.0 Weakly correlated
17 ZNF557 3 15.2 Weakly correlated
18 ZNF510 3 99.0 Weakly correlated
19 ZFP69B 3 99.0 Weakly correlated
20 ZNF534 3 19.6 Weakly correlated
21 ZNF561 3 43.0 Highly correlated
22 ZNF547 3 74.0 Weakly correlated
23 ZNF320 3 28.9 Moderately correlated
24 ZFP37 3 99.0 Weakly correlated
25 ZNF317 3 99.0 Weakly correlated
26 ZNF101 3 43.0 Highly correlated
27 ZNF175 3 94.0 Weakly correlated
28 ZNF707 3 74.0 Weakly correlated
29 ZNF585B 2 99.0 Weakly correlated
30 ZKSCAN8 2 160.0 Weakly correlated
31 ZNF177 2 94.0 Weakly correlated
32 ZNF723 2 15.2 Weakly correlated
33 ZNF479 2 6.4 Weakly correlated
34 ZNF671 2 94.0 Weakly correlated
35 ZNF417 2 28.9 Moderately correlated
36 ZNF597 1 94.0 Weakly correlated
37 ZNF735 1 28.9 Moderately correlated
38 ZNF786 1 99.0 Weakly correlated
39 ZNF610 1 28.9 Moderately correlated
40 ZNF587 1 28.9 Moderately correlated
41 ZNF675 1 8.6 Weakly correlated
42 ZNF695 1 28.9 Moderately correlated
43 ZNF92 1 28.9 Moderately correlated
44 ZNF681 1 28.9 Moderately correlated
45 ZNF331 1 94.0 Weakly correlated
46 ZKSCAN1 1 160.0 Weakly correlated
47 ZNF141 1 43.0 Highly correlated
48 ZNF202 1 160.0 Weakly correlated
49 ZNF225 1 74.0 Weakly correlated
50 ZNF251 1 94.0 Weakly correlated
51 ZNF257 1 0.0 Weakly correlated
52 ZNF274 1 99.0 Weakly correlated
53 ZNF28 1 28.9 Moderately correlated
54 ZNF304 1 99.0 Weakly correlated
55 ZNF586 1 43.0 Highly correlated
56 ZNF431 1 28.9 Moderately correlated
57 ZNF432 1 99.0 Weakly correlated
58 ZNF440 1 28.9 Moderately correlated
59 ZNF44 1 43.0 Highly correlated
60 ZNF468 1 28.9 Moderately correlated
61 ZNF485 1 94.0 Weakly correlated
62 ZNF490 1 43.0 Highly correlated
63 ZNF549 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 73 28.9 Moderately correlated
2 ZNF263 15 180.0 Weakly correlated
3 ZNF589 4 28.9 Moderately correlated
4 ZNF18 3 160.0 Weakly correlated
5 ZNF584 3 99.0 Weakly correlated
6 ZNF417 2 28.9 Moderately correlated
7 ZNF793 2 99.0 Weakly correlated
8 ZNF75D 2 94.0 Weakly correlated
9 ZNF175 2 94.0 Weakly correlated
10 ZNF197 2 99.0 Weakly correlated
11 ZNF671 2 94.0 Weakly correlated
12 ZNF2 1 99.0 Weakly correlated
13 ZNF440 1 28.9 Moderately correlated
14 ZNF707 1 74.0 Weakly correlated
15 ZNF468 1 28.9 Moderately correlated
16 ZNF101 1 43.0 Highly correlated
17 ZFP69B 1 99.0 Weakly correlated
18 ZNF735 1 28.9 Moderately correlated
19 ZNF534 1 19.6 Weakly correlated
20 ZNF510 1 99.0 Weakly correlated
21 ZNF479 1 6.4 Weakly correlated
22 ZNF331 1 94.0 Weakly correlated
23 ZNF723 1 15.2 Weakly correlated
24 ZNF766 1 43.0 Highly correlated
25 ZNF695 1 28.9 Moderately correlated
26 ZNF141 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated