ZRdb KZFP & Repeats
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LTR_MER61B

  • Name
    MER61B
  • Repbase
    MER61B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000884
Description :

MER61B has 4 bp TSDs. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatagagacaggaggcagccaagggtccccggcgaaaccccgccttcaagcctaaaacagcctgaaggctgaaaaaccggactgctggtcccggatgaagcccgccctttcccgactgattctttctgaataatgcccacctgcgcactgggaggacggggtggagcctcgggaagttcgcgccgtttgcagnggggaggagcctggcctctcctgttcctgtgtggtgacctgggattcaatctgtgaggtgggaggcctgttagcaggaccccctctcgctttgctgagagttntttttcctttttccttttcgcccaataaattccgttctcctcacccttcaatgtgtccgcgngcctaatctttcctggtcgtgtgacaagaacccggttttagctgaactaaggagaaagttctgcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 35 28.9 Moderately correlated
2 ZNF263 21 180.0 Weakly correlated
3 ZNF766 19 43.0 Highly correlated
4 ZNF382 16 99.0 Weakly correlated
5 ZNF394 9 99.0 Weakly correlated
6 ZNF589 8 28.9 Moderately correlated
7 ZNF584 6 99.0 Weakly correlated
8 ZNF2 5 99.0 Weakly correlated
9 ZNF417 5 28.9 Moderately correlated
10 ZNF197 5 99.0 Weakly correlated
11 ZNF534 5 19.6 Weakly correlated
12 ZNF175 5 94.0 Weakly correlated
13 ZKSCAN8 5 160.0 Weakly correlated
14 ZNF75D 5 94.0 Weakly correlated
15 ZNF558 4 99.0 Weakly correlated
16 ZNF587 4 28.9 Moderately correlated
17 ZNF610 4 28.9 Moderately correlated
18 ZNF92 4 28.9 Moderately correlated
19 ZFP37 4 99.0 Weakly correlated
20 ZNF18 4 160.0 Weakly correlated
21 ZNF28 3 28.9 Moderately correlated
22 ZNF324 3 99.0 Weakly correlated
23 ZNF792 3 94.0 Weakly correlated
24 ZFP69B 3 99.0 Weakly correlated
25 ZKSCAN1 3 160.0 Weakly correlated
26 ZNF251 3 94.0 Weakly correlated
27 ZNF597 3 94.0 Weakly correlated
28 ZNF317 2 99.0 Weakly correlated
29 ZFP14 2 99.0 Weakly correlated
30 ZIM3 2 87.0 Weakly correlated
31 ZNF705B 2 28.9 Moderately correlated
32 ZNF701 2 28.9 Moderately correlated
33 ZNF641 2 99.0 Weakly correlated
34 ZNF136 2 74.0 Weakly correlated
35 ZNF528 2 43.0 Highly correlated
36 ZNF274 2 99.0 Weakly correlated
37 ZNF333 1 99.0 Weakly correlated
38 ZNF490 1 43.0 Highly correlated
39 ZNF823 1 43.0 Highly correlated
40 ZNF816 1 28.9 Moderately correlated
41 ZNF799 1 43.0 Highly correlated
42 ZNF793 1 99.0 Weakly correlated
43 ZNF334 1 99.0 Weakly correlated
44 ZNF786 1 99.0 Weakly correlated
45 ZNF337 1 43.0 Highly correlated
46 ZNF33A 1 99.0 Weakly correlated
47 ZNF723 1 15.2 Weakly correlated
48 ZNF707 1 74.0 Weakly correlated
49 ZNF705D 1 28.9 Moderately correlated
50 ZNF34 1 99.0 Weakly correlated
51 ZNF284 1 43.0 Highly correlated
52 ZNF682 1 28.9 Moderately correlated
53 ZNF679 1 28.9 Moderately correlated
54 ZNF41 1 99.0 Weakly correlated
55 ZNF613 1 99.0 Weakly correlated
56 ZNF101 1 43.0 Highly correlated
57 ZNF468 1 28.9 Moderately correlated
58 ZNF595 1 43.0 Highly correlated
59 ZNF124 1 43.0 Highly correlated
60 ZNF133 1 99.0 Weakly correlated
61 ZNF479 1 6.4 Weakly correlated
62 ZNF141 1 43.0 Highly correlated
63 ZNF554 1 99.0 Weakly correlated
64 ZNF485 1 94.0 Weakly correlated
65 ZNF486 1 8.6 Weakly correlated
66 ZNF519 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 18 180.0 Weakly correlated
2 ZNF680 13 28.9 Moderately correlated
3 ZNF75D 3 94.0 Weakly correlated
4 ZNF534 2 19.6 Weakly correlated
5 ZNF584 2 99.0 Weakly correlated
6 ZNF417 2 28.9 Moderately correlated
7 ZNF197 2 99.0 Weakly correlated
8 ZNF175 2 94.0 Weakly correlated
9 ZNF589 2 28.9 Moderately correlated
10 ZIM3 2 87.0 Weakly correlated
11 ZNF485 1 94.0 Weakly correlated
12 ZFP14 1 99.0 Weakly correlated
13 ZNF18 1 160.0 Weakly correlated
14 ZNF597 1 94.0 Weakly correlated
15 ZNF792 1 94.0 Weakly correlated
16 ZNF141 1 43.0 Highly correlated
17 ZNF793 1 99.0 Weakly correlated
18 ZNF34 1 99.0 Weakly correlated
19 ZNF701 1 28.9 Moderately correlated
20 ZNF124 1 43.0 Highly correlated
21 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated