ZRdb KZFP & Repeats
...

LTR_MER61A

  • Name
    MER61A
  • Repbase
    MER61A
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000883
Description :

An earlier reconstruction name MER61 was refined and renamed MER61A.Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagacagccaggtgggagggggtccccggagaaactccaaccggcctgcgcactgggaggagtgcgcactggggtggagccncggaagttcgcgccgtttgcagcggggaggagcctggcccctcctcttcctgtgtggaacctgggattcaanctgcgaggcgggaagcgcnctagcagggactctggccttgcggagagtccctgtttcccctttttttccttttcacccaataaaaccctgccttactcacccttcaaatcgtctgcgagcctaaattttcgtggccgtgggacaaggaccccgtctttagctgaactaaggaaaagtcctgcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 426 28.9 Moderately correlated
2 ZNF263 99 180.0 Weakly correlated
3 ZNF766 33 43.0 Highly correlated
4 ZNF417 30 28.9 Moderately correlated
5 ZNF587 25 28.9 Moderately correlated
6 ZNF382 24 99.0 Weakly correlated
7 ZNF92 16 28.9 Moderately correlated
8 ZNF18 16 160.0 Weakly correlated
9 ZNF534 14 19.6 Weakly correlated
10 ZNF589 14 28.9 Moderately correlated
11 ZNF28 13 28.9 Moderately correlated
12 ZNF394 12 99.0 Weakly correlated
13 ZNF75D 12 94.0 Weakly correlated
14 ZNF197 9 99.0 Weakly correlated
15 ZKSCAN8 7 160.0 Weakly correlated
16 ZNF2 7 99.0 Weakly correlated
17 ZFP37 6 99.0 Weakly correlated
18 ZNF479 6 6.4 Weakly correlated
19 ZNF175 5 94.0 Weakly correlated
20 ZKSCAN1 5 160.0 Weakly correlated
21 ZNF793 5 99.0 Weakly correlated
22 ZNF324 5 99.0 Weakly correlated
23 ZNF705D 5 28.9 Moderately correlated
24 ZNF679 4 28.9 Moderately correlated
25 ZNF705B 4 28.9 Moderately correlated
26 ZNF251 4 94.0 Weakly correlated
27 ZNF468 4 28.9 Moderately correlated
28 ZNF554 3 99.0 Weakly correlated
29 ZNF441 3 43.0 Highly correlated
30 ZNF510 3 99.0 Weakly correlated
31 ZNF528 3 43.0 Highly correlated
32 ZNF547 3 74.0 Weakly correlated
33 ZNF84 3 99.0 Weakly correlated
34 ZNF558 3 99.0 Weakly correlated
35 ZNF584 3 99.0 Weakly correlated
36 ZNF723 3 15.2 Weakly correlated
37 ZFP69B 3 99.0 Weakly correlated
38 ZNF282 3 319.0 Weakly correlated
39 ZNF230 3 28.9 Moderately correlated
40 ZNF674 2 99.0 Weakly correlated
41 ZNF549 2 87.0 Weakly correlated
42 ZNF264 2 99.0 Weakly correlated
43 ZNF274 2 99.0 Weakly correlated
44 ZNF250 2 99.0 Weakly correlated
45 ZNF519 2 19.6 Weakly correlated
46 ZNF189 2 99.0 Weakly correlated
47 ZNF182 2 99.0 Weakly correlated
48 ZNF317 2 99.0 Weakly correlated
49 ZNF610 2 28.9 Moderately correlated
50 ZNF649 2 28.9 Moderately correlated
51 ZFP57 2 87.0 Weakly correlated
52 ZNF331 2 94.0 Weakly correlated
53 ZNF695 1 28.9 Moderately correlated
54 ZNF701 1 28.9 Moderately correlated
55 ZNF141 1 43.0 Highly correlated
56 ZNF101 1 43.0 Highly correlated
57 ZNF135 1 94.0 Weakly correlated
58 ZNF124 1 43.0 Highly correlated
59 ZFP14 1 99.0 Weakly correlated
60 ZNF735 1 28.9 Moderately correlated
61 ZKSCAN5 1 160.0 Weakly correlated
62 ZNF763 1 15.2 Weakly correlated
63 ZNF765 1 8.6 Weakly correlated
64 ZIM3 1 87.0 Weakly correlated
65 ZNF778 1 74.0 Weakly correlated
66 ZNF77 1 87.0 Weakly correlated
67 ZNF816 1 28.9 Moderately correlated
68 ZNF350 1 99.0 Weakly correlated
69 ZNF486 1 8.6 Weakly correlated
70 ZNF343 1 74.0 Weakly correlated
71 ZNF41 1 99.0 Weakly correlated
72 ZNF425 1 94.0 Weakly correlated
73 ZNF429 1 28.9 Moderately correlated
74 ZNF440 1 28.9 Moderately correlated
75 PRDM9 1 0.0 Weakly correlated
76 ZNF320 1 28.9 Moderately correlated
77 ZNF483 1 99.0 Weakly correlated
78 ZNF157 1 99.0 Weakly correlated
79 ZNF506 1 28.9 Moderately correlated
80 ZNF284 1 43.0 Highly correlated
81 ZNF530 1 28.9 Moderately correlated
82 ZNF550 1 94.0 Weakly correlated
83 ZNF257 1 0.0 Weakly correlated
84 ZNF563 1 28.9 Moderately correlated
85 ZNF597 1 94.0 Weakly correlated
86 ZNF611 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 81 28.9 Moderately correlated
2 ZNF263 75 180.0 Weakly correlated
3 ZNF417 16 28.9 Moderately correlated
4 ZNF534 9 19.6 Weakly correlated
5 ZNF587 9 28.9 Moderately correlated
6 ZNF75D 8 94.0 Weakly correlated
7 ZNF18 4 160.0 Weakly correlated
8 ZNF468 3 28.9 Moderately correlated
9 ZNF84 2 99.0 Weakly correlated
10 ZNF723 1 15.2 Weakly correlated
11 ZNF528 1 43.0 Highly correlated
12 ZNF320 1 28.9 Moderately correlated
13 ZNF2 1 99.0 Weakly correlated
14 ZKSCAN8 1 160.0 Weakly correlated
15 ZNF324 1 99.0 Weakly correlated
16 ZNF440 1 28.9 Moderately correlated
17 ZNF597 1 94.0 Weakly correlated
18 ZNF611 1 19.6 Weakly correlated
19 ZNF735 1 28.9 Moderately correlated
20 ZNF331 1 94.0 Weakly correlated
21 ZNF695 1 28.9 Moderately correlated
22 ZNF530 1 28.9 Moderately correlated
23 ZFP14 1 99.0 Weakly correlated
24 ZNF189 1 99.0 Weakly correlated
25 ZNF793 1 99.0 Weakly correlated
26 ZNF547 1 74.0 Weakly correlated
27 ZNF479 1 6.4 Weakly correlated
28 ZNF274 1 99.0 Weakly correlated
29 ZNF382 1 99.0 Weakly correlated
30 ZNF679 1 28.9 Moderately correlated
31 ZKSCAN5 1 160.0 Weakly correlated
32 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF534 19.6 Weakly correlated
3 ZNF75D 94.0 Weakly correlated