ZRdb KZFP & Repeats
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LTR_MER61-INT

  • Name
    MER61-INT
  • Repbase
    MER61I
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000882
Description :

MER61-int ERV is flanked by MER61 LTRs. The primer binding site (PBS) issimilar to that of HERVK9. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tttttggcgcccaacgtggggncttgagaaggggtgagtgagatgcaaaccaaaaaatctttttccctttcgcttctaagccttttcgtcctcggacttctgagggtaggggaaaccgtgcccccacccccgtcgctcccgggggtcggaggcctttccatggccttttccttcctttttcgggacggaccggcgagcggcggctccccncnccctcccctccctgccggggctgggacgcatggcccaagggtccccagcggcatggctggcgttccccgccacgcgcccacggagtcttcccctcccccggccaaggggtccagctccatcggacagcaattaagcttctctccctggtggaggaaccatttgcataagaataagaggttcttccccaggcatctttaaactgttttttttcttccttttctccaccccgtcagcagttaacttttaagcgagtttttttcttttagaagacgttttactaggccaggaacgataaggatcactgtttatattctctgtaaagttttaattgtgaaaaaggatttgtgaggctggtcttaagctgtagccaatctggtgtgctttgcatgtctgtatggtcagtagcaaactttgctgcaggcctccatcttgttttacgtccttgggagcgtgacctgtaaccacgtggcaatgctttncgtttagcctctgccattttacaatggcggcccgggttcaatcctggcttagggaatgagtnctttctggtttgatatctgcgtgacttttgccatttgctgattctcttcccctccacgaaccgccttgaatcttcctttctctgagctacctttaaagattctagattttgtaaaaactgcttaccncctctgaaaatacctcgtacactcgcggttaagtcataaccttagttgaggcttgttggtttcacctgtgaggttacctttggtaaagttcgaaagccagaaatattggccgcttggcgcggctaaagtcgggtaataagggantttaaaaggattttcttaaagagcgctcagcttaattaaaagtggatatccaagttataggtatatttaaaaggcctttatgtttttctcttcttggatcttgttttgctggaaaaaggtttttttctcagtcgactgaattatttttctccattttgtcttgccactcttaatgcacgcatgagaggggagagacctctgttttcctcatggaaccccaggaattaaaagcggatagatccctctcaaaatctgtttttgctccagctatgcctgtttattaggccctagaagctgcatgttttcctagccctgtctcttaaagggccccacccagaggccaataatccaattaggagattggcaaacgaaaaatcttatggcgactgggttttcttctgcctgtctgtgtagttatatatgtgttgtgtgtgtgatgtctgtaaaaagagctctaattaattggcctaaagaaagacaagcgcttggatcaaatattttttaaagggaagataaaagctgtggtacctttcagttcacgtgactttaatctttgagaaataaaaacagccttaaagattattggtaaaatgcagatgtcatcaaaatgtaaataggtggactaaattatgcaggtcagatgcaaggtttgctaagtgttttaaggttacaaactgctttttgggttttgagaactatttgacttgccggcttcacaactggtaaggcctggggacatatggaactaaccacgcccttaattatgctggaaggagtcaaaccttggctgcacctagcacacaattaaagcaacttaccaggttttacattaaagttaaaaattgctaggagttaccattataacatgtaattgaaactactggaaatagatttacatgcaaggtgtgtaagaacagtaaaatgtgtttttagtaaaaggttatnaagaaggcatggaaatgtaaatttttgcctagggtaaaggattgttttgaattagataaganaaagctgaaggttcaaacaagtggtggaaggattgtggaaattaatcttgcagaagttctctgtgtgaacatattgactaaattcaaaagggtattatatggtttttctgtaaattgagcattgaaataaaagcacaacaaggtnttcttaaggcgctaatctgctctttggcaaaatttgtaaagggttataaaaggtttttgcttctttaaaatttctgagtcatcattttggcaaaataaataacttatggtaatctggaattctatttcataatatcaagtgttttaaacatatttaacaggcttcccaaaatcaaacttcagtttcaaaattgtctttcctgacgcctggcttttcggatgcttcagagggcccctgaagcgtccagaaaagagaggtaaacaggattatttgacatgtttaggtacatgggattgccaaaatgatgttcaatcttctttaggttatattttggtgaataatactaatatatgttccaaaattgtatgggatttctaaaattctaatgtctgagtatatgctatcaatcataattaaggttgttatgttaagttattgtaaaccacggagataaccaaacttctttgtcaatcgtgtttctaactgtaactaccctggacattttgctattcacagacaattgttgtcttgttttaatccttttcaaagatggtttataataagctatagaactttgacaggtgctctcaaatacaggtttctgataactttggagattgtgacattggaataaaggaaaatgtacaggactcatgaagagctgaaatgttcacgaatatcaagcaaaacaagagttaactaaatggactgaactcagaaagctgaagcaatctttttgacttttgcttggaatattgctgatccttgttttgtttttcagagtcaaggaaacttattttgaactatttacggcctttaataattgagtaaggtatactcctgtgaacaaaatttggagcatgtttgtttctctctgcctggttcctctagaatttggaaactatctgtgagtattcttaacttatggcaatatagttgtttgcatcangtgcaataagaatccatttttcttttgcaacaggacgcaattggagaaactggttgttttaccaaggctttgactggaagggtatgcttccctttaaggagtcaagctcgacttgcagagccgataaaagccccntggggaaactggcctcatacccttgtctacgcagtccctgtacagggttcctgacctgtggtcagtaaagaatgtcactttctaacaggcccaggagctccaagtttatcttgggaccttaagaggagaggatcacccaactcacaggtatttgaggatacaaacccatggctgggctcggctttaaaaggtcttatctgagattccttgtggaacagagttccatcaaagccaatccaaaaggcctatgtagaaataattattcttgctgcactttatgcaaataatcaggccaagtataagactaaagtctattttgcaaacaactcagtcctatcatgattttttttaacaaaaatgaggactggagagagagaaattatgtttcaaaacttatcatacatttgtcattaaattctaaactcattagttgtttttaagtttttgcctacattttagactaaccctgcttgttcctgtgaaccaaccagcaatctccggctgcagctcagaaagaacaaaagggatgggtaatgtaaaaatctggatcaatattctagttctgagcaattatcctgcaaatcctgccaggtgatgggaataaatagggtgcccatcacccggaggtttcctttttgggaaagtaagaccaagggagctaaccaaagccaagcaccatgcacccaaatcctagcaagcataactatagccaccagttatctgggcgtgtcacaagacatccttttctctcccttgttggaggaggactcagttccacagcttcaccttagcattcggcttatgataaggagtccatgcaacccccccgagacacatttttgtcccaaactcaattccaagcttcgggtcaaagccctaggaaagaaaactggatctgagggatccagaggcagacgacaacggaggttaaaaggcacagcgcaggtgagcgtggctgattcctgccgattaagccaagcttcccgtttcatggataaaggccacgctagtatccatggcataaatgaggtctagggaactcaaggctactgacagcaggggagatagggcatacgtgggtagagcggataattcccaccccctaggcccccctgcttcatgggtgcaagccgctttggcacccatggcggcacctgccaaggtcgccgggactcggggatgcaaggacggaagagggaaagaggacgctcttccttctctccctcacgtaccccgggtatctgctaggaagagaagggaaccagggacgcctgctcccctctttctagatgggtagccattcatcttcagtctgtacccctttcgaatgcatcctgaacccctgggactcctttgaaaaaacgccttcttttttcctttctcctcctctgtcctctcttcactgataggtaattgtgtctccgtactacgggacactcccctcagatgcatcctccaaactgggaagagttaatttcccaaaccttaaactggttggcttaggattgggctcaggggaagggaacccagaagcccgacatgccggcaaaaggtaaagttttttttnnnncgnnncgnnnnnnnnncgnnnnnnnnnnnncgtttttttaccagtcgggcttttggcctccctctccctgtgcaaactggtaaaaggcctcgggatttttgagctgtccttacccctccccttgtttcgttttgatacatgttttctaataacccggtttgtctcttctcgccttcaggccatcaaactccaaacggtcatgcaaccggagcctcggacgatggccccttctgccgggaacccttagataggcctctgagggagctctgactgccgtttccccaaaacagcgccccctgtcagcaggaagcagttaagatcggtcttcgtccttatccttatccttattctaacggcagttagatgtacttctttagaggggggaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 161 28.9 Moderately correlated
2 ZNF486 110 8.6 Weakly correlated
3 ZNF595 65 43.0 Highly correlated
4 ZNF616 47 43.0 Highly correlated
5 ZNF793 47 99.0 Weakly correlated
6 ZNF43 42 43.0 Highly correlated
7 ZNF417 37 28.9 Moderately correlated
8 ZNF382 35 99.0 Weakly correlated
9 ZNF85 32 28.9 Moderately correlated
10 ZNF587 29 28.9 Moderately correlated
11 ZNF766 26 43.0 Highly correlated
12 ZNF18 21 160.0 Weakly correlated
13 ZNF263 21 180.0 Weakly correlated
14 ZNF92 20 28.9 Moderately correlated
15 ZNF479 17 6.4 Weakly correlated
16 ZNF534 13 19.6 Weakly correlated
17 ZNF394 12 99.0 Weakly correlated
18 ZNF320 12 28.9 Moderately correlated
19 ZFP69B 11 99.0 Weakly correlated
20 ZNF2 11 99.0 Weakly correlated
21 ZNF705B 9 28.9 Moderately correlated
22 ZFP37 9 99.0 Weakly correlated
23 ZNF324 9 99.0 Weakly correlated
24 ZIM3 9 87.0 Weakly correlated
25 ZNF175 8 94.0 Weakly correlated
26 ZNF707 7 74.0 Weakly correlated
27 ZNF701 7 28.9 Moderately correlated
28 ZNF506 6 28.9 Moderately correlated
29 ZKSCAN1 6 160.0 Weakly correlated
30 ZNF705D 6 28.9 Moderately correlated
31 ZNF248 6 99.0 Weakly correlated
32 ZNF589 5 28.9 Moderately correlated
33 ZNF75D 5 94.0 Weakly correlated
34 ZNF786 5 99.0 Weakly correlated
35 ZKSCAN8 5 160.0 Weakly correlated
36 ZNF317 5 99.0 Weakly correlated
37 ZNF735 5 28.9 Moderately correlated
38 ZNF28 5 28.9 Moderately correlated
39 ZNF679 5 28.9 Moderately correlated
40 ZNF101 4 43.0 Highly correlated
41 ZNF669 4 43.0 Highly correlated
42 ZNF510 4 99.0 Weakly correlated
43 ZNF468 4 28.9 Moderately correlated
44 ZNF197 4 99.0 Weakly correlated
45 ZNF723 4 15.2 Weakly correlated
46 ZNF549 3 87.0 Weakly correlated
47 ZNF554 3 99.0 Weakly correlated
48 ZNF584 3 99.0 Weakly correlated
49 ZNF610 3 28.9 Moderately correlated
50 ZNF141 3 43.0 Highly correlated
51 ZNF695 3 28.9 Moderately correlated
52 ZNF230 3 28.9 Moderately correlated
53 ZNF251 3 94.0 Weakly correlated
54 ZNF605 2 99.0 Weakly correlated
55 ZNF597 2 94.0 Weakly correlated
56 ZNF7 2 99.0 Weakly correlated
57 ZNF789 2 99.0 Weakly correlated
58 ZNF93 2 8.6 Weakly correlated
59 ZNF124 2 43.0 Highly correlated
60 ZNF585B 2 99.0 Weakly correlated
61 ZNF558 2 99.0 Weakly correlated
62 ZNF528 2 43.0 Highly correlated
63 ZNF140 2 99.0 Weakly correlated
64 ZNF225 2 74.0 Weakly correlated
65 ZNF222 2 43.0 Highly correlated
66 ZNF169 1 94.0 Weakly correlated
67 ZNF274 1 99.0 Weakly correlated
68 ZNF273 1 28.9 Moderately correlated
69 ZNF765 1 8.6 Weakly correlated
70 ZNF778 1 74.0 Weakly correlated
71 ZNF780A 1 43.0 Highly correlated
72 ZNF202 1 160.0 Weakly correlated
73 ZNF182 1 99.0 Weakly correlated
74 ZNF418 1 43.0 Highly correlated
75 ZNF157 1 99.0 Weakly correlated
76 ZNF850 1 28.9 Moderately correlated
77 ZNF8 1 99.0 Weakly correlated
78 ZNF91 1 6.0 Weakly correlated
79 ZFP30 1 99.0 Weakly correlated
80 ZNF674 1 99.0 Weakly correlated
81 ZNF586 1 43.0 Highly correlated
82 ZNF561 1 43.0 Highly correlated
83 ZNF560 1 43.0 Highly correlated
84 ZNF530 1 28.9 Moderately correlated
85 ZNF519 1 19.6 Weakly correlated
86 ZNF490 1 43.0 Highly correlated
87 ZNF649 1 28.9 Moderately correlated
88 ZNF485 1 94.0 Weakly correlated
89 ZNF284 1 43.0 Highly correlated
90 ZNF675 1 8.6 Weakly correlated
91 ZNF483 1 99.0 Weakly correlated
92 ZNF471 1 94.0 Weakly correlated
93 ZNF681 1 28.9 Moderately correlated
94 ZNF44 1 43.0 Highly correlated
95 ZNF441 1 43.0 Highly correlated
96 ZNF440 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF595 65 43.0 Highly correlated
2 ZNF43 41 43.0 Highly correlated
3 ZNF417 32 28.9 Moderately correlated
4 ZNF587 28 28.9 Moderately correlated
5 ZNF793 28 99.0 Weakly correlated
6 ZNF85 26 28.9 Moderately correlated
7 ZNF479 14 6.4 Weakly correlated
8 ZNF534 9 19.6 Weakly correlated
9 ZIM3 7 87.0 Weakly correlated
10 ZNF735 5 28.9 Moderately correlated
11 ZNF320 4 28.9 Moderately correlated
12 ZNF766 4 43.0 Highly correlated
13 ZNF506 3 28.9 Moderately correlated
14 ZNF701 3 28.9 Moderately correlated
15 ZNF141 3 43.0 Highly correlated
16 ZNF616 2 43.0 Highly correlated
17 ZNF468 2 28.9 Moderately correlated
18 ZNF707 2 74.0 Weakly correlated
19 ZFP69B 2 99.0 Weakly correlated
20 ZNF92 2 28.9 Moderately correlated
21 ZNF486 2 8.6 Weakly correlated
22 ZNF101 2 43.0 Highly correlated
23 ZNF680 2 28.9 Moderately correlated
24 ZNF669 2 43.0 Highly correlated
25 ZNF723 2 15.2 Weakly correlated
26 ZNF75D 2 94.0 Weakly correlated
27 ZNF317 1 99.0 Weakly correlated
28 ZNF7 1 99.0 Weakly correlated
29 ZNF28 1 28.9 Moderately correlated
30 ZNF705B 1 28.9 Moderately correlated
31 ZNF597 1 94.0 Weakly correlated
32 ZNF554 1 99.0 Weakly correlated
33 ZNF263 1 180.0 Weakly correlated
34 ZNF2 1 99.0 Weakly correlated
35 ZNF382 1 99.0 Weakly correlated
36 ZNF674 1 99.0 Weakly correlated
37 ZNF169 1 94.0 Weakly correlated
38 ZNF679 1 28.9 Moderately correlated
39 ZNF675 1 8.6 Weakly correlated
40 ZNF789 1 99.0 Weakly correlated
41 ZNF695 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Weakly correlated
2 ZNF479 6.4 Weakly correlated
3 ZNF534 19.6 Weakly correlated
4 ZNF587 28.9 Moderately correlated
5 ZNF595 43.0 Highly correlated
6 ZNF793 99.0 Weakly correlated
7 ZNF85 28.9 Moderately correlated