ZRdb KZFP & Repeats
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LTR_MER57F

  • Name
    MER57F
  • Repbase
    MER57F
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000889
Description :

MER57F was renamed from MER93B. Appears to be simian-specific. Note thatMER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaagtaaattaaaatggagaccaggcctgaagaatccctgagcagacaaagccagttaggcctcataagtgaccttaaccttgcttgatttgcaaacataagcgaaacttaacttgagctatttcttgtaaatgcctatattaaagaaaaacagaacttaagctcaaccaatcagaagcagccaacaaacttataattatataactagggactttccagcgggatagaccaaataaggcaactgtataactgtaaccaatcaaatattttctttgctttacttccgtgttcgtcctataaaagcctcccccttgcgttccctcggtggagctcccgaaccacttctggtttggagctgcccgattcatgaatcgctgtttgctcaaataaactctttaaaattttattgtgcctcagtttaccttttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 56 87.0 Weakly correlated
2 ZNF382 22 99.0 Weakly correlated
3 ZNF766 11 43.0 Weakly correlated
4 ZNF558 6 99.0 Weakly correlated
5 ZNF394 6 99.0 Weakly correlated
6 ZNF175 6 94.0 Weakly correlated
7 ZNF317 5 99.0 Weakly correlated
8 ZNF597 5 94.0 Weakly correlated
9 ZNF197 5 99.0 Weakly correlated
10 ZNF18 5 160.0 Weakly correlated
11 ZNF793 4 99.0 Weakly correlated
12 ZKSCAN8 4 160.0 Weakly correlated
13 ZKSCAN1 4 160.0 Weakly correlated
14 ZNF589 4 28.9 Weakly correlated
15 ZNF324 4 99.0 Weakly correlated
16 ZNF2 4 99.0 Weakly correlated
17 ZNF554 3 99.0 Weakly correlated
18 ZNF331 3 94.0 Weakly correlated
19 ZNF506 3 28.9 Weakly correlated
20 ZNF263 3 180.0 Weakly correlated
21 ZNF701 3 28.9 Weakly correlated
22 ZFP37 3 99.0 Weakly correlated
23 ZFP69B 3 99.0 Weakly correlated
24 ZNF584 2 99.0 Weakly correlated
25 ZNF92 2 28.9 Weakly correlated
26 ZNF789 2 99.0 Weakly correlated
27 ZNF792 2 94.0 Weakly correlated
28 ZNF528 2 43.0 Weakly correlated
29 ZIM3 2 87.0 Weakly correlated
30 ZNF100 2 28.9 Weakly correlated
31 ZNF101 2 43.0 Weakly correlated
32 ZNF264 2 99.0 Weakly correlated
33 ZNF251 2 94.0 Weakly correlated
34 ZNF182 1 99.0 Weakly correlated
35 ZNF133 1 99.0 Weakly correlated
36 ZNF77 1 87.0 Weakly correlated
37 ZNF136 1 74.0 Highly correlated
38 ZNF735 1 28.9 Weakly correlated
39 ZNF707 1 74.0 Highly correlated
40 ZNF705D 1 28.9 Weakly correlated
41 ZNF705B 1 28.9 Weakly correlated
42 ZNF479 1 6.4 Weakly correlated
43 ZNF610 1 28.9 Weakly correlated
44 ZNF28 1 28.9 Weakly correlated
45 ZNF30 1 94.0 Weakly correlated
46 ZNF436 1 180.0 Weakly correlated
47 ZNF440 1 28.9 Weakly correlated
48 ZNF547 1 74.0 Highly correlated
49 ZNF441 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 40 87.0 Weakly correlated
2 ZNF793 3 99.0 Weakly correlated
3 ZNF506 3 28.9 Weakly correlated
4 ZNF597 3 94.0 Weakly correlated
5 ZFP37 2 99.0 Weakly correlated
6 ZIM3 2 87.0 Weakly correlated
7 ZNF251 2 94.0 Weakly correlated
8 ZNF554 2 99.0 Weakly correlated
9 ZNF701 2 28.9 Weakly correlated
10 ZNF264 1 99.0 Weakly correlated
11 ZKSCAN8 1 160.0 Weakly correlated
12 ZNF331 1 94.0 Weakly correlated
13 ZNF382 1 99.0 Weakly correlated
14 ZNF766 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats