ZRdb KZFP & Repeats
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LTR_MER57E3

  • Name
    MER57E3
  • Repbase
    MER57E3
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000871
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaccctgcttgngacacatgtgaaaaatgcaggggaaaaccagtcccctgtggagtgtgaaaataattaagtggcaggcaattagactgaggtggctctagtgccctgggttcctacttaaaaaaaaatctaactcaaatgcattttttgtaaattactacnttaggggaaaacaaaattcaggcttaaccaaccataaaccgccaattaanctctgattacataaccaggaaatttccacctggatngtacaaatnaagaaactacgtaactgtacctaaccaattattgaatttggtttgcttcntcatgcaccttataaaagcctttccttcaagcccctcccgtggaccacaaactacaaaccatagctgggtgctctacgattcntgaatcactctttgattaaattctttaatatttttgcggtgactcccataaatttttaacaggagaaaggagggactggggaccccacggacca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF394 32 99.0 Weakly correlated
2 ZNF382 19 99.0 Weakly correlated
3 ZNF2 17 99.0 Weakly correlated
4 ZFP37 15 99.0 Weakly correlated
5 ZNF766 13 43.0 Weakly correlated
6 ZNF324 10 99.0 Weakly correlated
7 ZNF263 10 180.0 Weakly correlated
8 ZNF101 9 43.0 Weakly correlated
9 ZNF534 6 19.6 Weakly correlated
10 ZIM3 5 87.0 Weakly correlated
11 ZNF549 5 87.0 Weakly correlated
12 ZNF18 4 160.0 Weakly correlated
13 ZNF197 4 99.0 Weakly correlated
14 ZNF441 4 43.0 Weakly correlated
15 ZFP69B 4 99.0 Weakly correlated
16 ZNF589 3 28.9 Weakly correlated
17 ZNF140 3 99.0 Weakly correlated
18 ZKSCAN8 3 160.0 Weakly correlated
19 ZNF641 3 99.0 Weakly correlated
20 ZNF558 3 99.0 Weakly correlated
21 ZNF610 2 28.9 Weakly correlated
22 ZNF597 2 94.0 Weakly correlated
23 ZNF679 2 28.9 Weakly correlated
24 ZNF705B 2 28.9 Weakly correlated
25 ZNF674 2 99.0 Weakly correlated
26 ZNF786 2 99.0 Weakly correlated
27 ZNF793 2 99.0 Weakly correlated
28 ZNF479 2 6.4 Weakly correlated
29 ZNF28 2 28.9 Weakly correlated
30 ZNF257 2 0.0 Weakly correlated
31 ZNF202 2 160.0 Weakly correlated
32 ZNF175 2 94.0 Weakly correlated
33 ZNF816 1 28.9 Weakly correlated
34 ZNF845 1 28.9 Weakly correlated
35 ZNF695 1 28.9 Weakly correlated
36 ZNF680 1 28.9 Weakly correlated
37 ZFP30 1 99.0 Weakly correlated
38 ZNF84 1 99.0 Weakly correlated
39 ZNF671 1 94.0 Weakly correlated
40 ZNF611 1 19.6 Weakly correlated
41 ZNF584 1 99.0 Weakly correlated
42 ZNF563 1 28.9 Weakly correlated
43 ZNF560 1 43.0 Weakly correlated
44 ZNF547 1 74.0 Highly correlated
45 ZNF510 1 99.0 Weakly correlated
46 ZNF483 1 99.0 Weakly correlated
47 ZNF44 1 43.0 Weakly correlated
48 ZNF425 1 94.0 Weakly correlated
49 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 2 87.0 Weakly correlated
2 ZNF534 2 19.6 Weakly correlated
3 ZNF101 1 43.0 Weakly correlated
4 ZNF140 1 99.0 Weakly correlated
5 ZNF549 1 87.0 Weakly correlated
6 ZNF695 1 28.9 Weakly correlated
7 ZNF674 1 99.0 Weakly correlated
8 ZNF679 1 28.9 Weakly correlated
9 ZNF766 1 43.0 Weakly correlated
10 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats