ZRdb KZFP & Repeats
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LTR_MER57E1

  • Name
    MER57E1
  • Repbase
    MER57E1
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000869
Description :

MER57E1 is also known as MER93b_LTR. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaaataattaattgggaggccattaggctgaggcggctccagcgccttgggttcctacgtaagcaaaccgaaacccaactcagtgtaaacggtaaaacgaaacttaagcttaaccaatcagaaaccgccaactaacctctaactagggactttccactggaatgatccaaataaggctactgctccactttaaccaatcaaatattttctttgtcttgcttccgcgnncaccttataaaagccttcccctcgcgccccttcggtggagccccgaaccgcttgcggtctggngctgcccgattcatgaatcgctgtctgctcaaataaactctttaaaattttaatgtgcctaagtttatcttttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 227 87.0 Highly correlated
2 ZNF382 31 99.0 Weakly correlated
3 ZNF766 21 43.0 Weakly correlated
4 ZIM3 18 87.0 Highly correlated
5 ZNF793 17 99.0 Weakly correlated
6 ZNF77 16 87.0 Highly correlated
7 ZNF680 13 28.9 Weakly correlated
8 ZNF263 12 180.0 Weakly correlated
9 ZNF175 8 94.0 Weakly correlated
10 ZNF589 8 28.9 Weakly correlated
11 ZNF18 6 160.0 Weakly correlated
12 ZNF394 5 99.0 Weakly correlated
13 ZNF558 4 99.0 Weakly correlated
14 ZNF350 4 99.0 Weakly correlated
15 ZNF584 4 99.0 Weakly correlated
16 ZNF324 3 99.0 Weakly correlated
17 ZFP37 3 99.0 Weakly correlated
18 ZNF765 3 8.6 Weakly correlated
19 ZNF701 3 28.9 Weakly correlated
20 ZNF317 3 99.0 Weakly correlated
21 ZFP69B 3 99.0 Weakly correlated
22 ZNF251 3 94.0 Weakly correlated
23 ZNF273 3 28.9 Weakly correlated
24 ZNF2 3 99.0 Weakly correlated
25 ZNF28 2 28.9 Weakly correlated
26 ZNF778 2 74.0 Moderately correlated
27 ZNF534 2 19.6 Weakly correlated
28 ZNF169 2 94.0 Weakly correlated
29 ZNF101 2 43.0 Weakly correlated
30 ZNF320 2 28.9 Weakly correlated
31 ZFP57 2 87.0 Highly correlated
32 ZNF789 1 99.0 Weakly correlated
33 ZNF792 1 94.0 Weakly correlated
34 ZNF845 1 28.9 Weakly correlated
35 ZFP30 1 99.0 Weakly correlated
36 ZNF723 1 15.2 Weakly correlated
37 ZNF705B 1 28.9 Weakly correlated
38 ZNF92 1 28.9 Weakly correlated
39 ZNF679 1 28.9 Weakly correlated
40 ZNF597 1 94.0 Weakly correlated
41 ZNF582 1 99.0 Weakly correlated
42 ZNF554 1 99.0 Weakly correlated
43 ZNF528 1 43.0 Weakly correlated
44 ZNF510 1 99.0 Weakly correlated
45 ZNF471 1 94.0 Weakly correlated
46 ZNF264 1 99.0 Weakly correlated
47 ZNF257 1 0.0 Weakly correlated
48 ZNF17 1 69.0 Weakly correlated
49 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 111 87.0 Highly correlated
2 ZNF793 10 99.0 Weakly correlated
3 ZIM3 8 87.0 Highly correlated
4 ZNF766 4 43.0 Weakly correlated
5 ZNF680 4 28.9 Weakly correlated
6 ZNF263 3 180.0 Weakly correlated
7 ZNF701 2 28.9 Weakly correlated
8 ZNF273 2 28.9 Weakly correlated
9 ZNF317 1 99.0 Weakly correlated
10 ZFP37 1 99.0 Weakly correlated
11 ZNF257 1 0.0 Weakly correlated
12 ZNF554 1 99.0 Weakly correlated
13 ZNF17 1 69.0 Weakly correlated
14 ZNF792 1 94.0 Weakly correlated
15 ZNF534 1 19.6 Weakly correlated
16 ZNF264 1 99.0 Weakly correlated
17 ZNF320 1 28.9 Weakly correlated
18 ZNF169 1 94.0 Weakly correlated
19 ZNF471 1 94.0 Weakly correlated
20 ZNF77 1 87.0 Highly correlated
21 ZNF705B 1 28.9 Weakly correlated
22 ZKSCAN5 1 160.0 Weakly correlated
23 ZFP57 1 87.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF793 99.0 Weakly correlated