ZRdb KZFP & Repeats
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LTR_MER57D

  • Name
    MER57D
  • Repbase
    MER57D
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000868
Description :

MER57D has 4 bp TSDs. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaattaaataagcaggaggccattagcctgaggctgtctccgtactttgagttcctacgtaacaaactgcaacctaacttagtacgtaaacaaaccgaaacctaacttaggagtatattttgtaacaaatagccgggtttcagccaatcacaagacagccgagcttcagccaatcacaggcagccaactgatcanaccatgcccaaataaggcaaacgcctagctgtagccaatcaggtgatttctctactttgcttccgtgttcggcctataaaagctcgctgctcacgctgctgggcggagctctctgaacctcttctggttctgagtgctgcccgattcatgaatcgttctttgctcaaataaactctgttaaatttaatttgtctaaagtttttcttttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 245 87.0 Highly correlated
2 ZFP57 16 87.0 Highly correlated
3 ZNF382 16 99.0 Weakly correlated
4 ZNF766 13 43.0 Weakly correlated
5 ZIM3 12 87.0 Highly correlated
6 ZNF350 10 99.0 Weakly correlated
7 ZNF486 4 8.6 Weakly correlated
8 ZNF589 4 28.9 Weakly correlated
9 ZNF394 4 99.0 Weakly correlated
10 ZNF317 4 99.0 Weakly correlated
11 ZNF18 4 160.0 Weakly correlated
12 ZNF175 3 94.0 Weakly correlated
13 ZNF679 3 28.9 Weakly correlated
14 ZNF101 3 43.0 Weakly correlated
15 ZNF789 3 99.0 Weakly correlated
16 ZNF263 3 180.0 Weakly correlated
17 ZNF197 3 99.0 Weakly correlated
18 ZNF793 2 99.0 Weakly correlated
19 ZNF558 2 99.0 Weakly correlated
20 ZNF554 2 99.0 Weakly correlated
21 ZKSCAN1 2 160.0 Weakly correlated
22 ZNF534 2 19.6 Weakly correlated
23 ZFP37 2 99.0 Weakly correlated
24 ZNF77 2 87.0 Highly correlated
25 ZNF736 1 43.0 Weakly correlated
26 ZNF765 1 8.6 Weakly correlated
27 ZFP69B 1 99.0 Weakly correlated
28 ZNF707 1 74.0 Moderately correlated
29 ZNF705D 1 28.9 Weakly correlated
30 ZNF695 1 28.9 Weakly correlated
31 ZNF680 1 28.9 Weakly correlated
32 ZNF823 1 43.0 Weakly correlated
33 ZFP69 1 99.0 Weakly correlated
34 ZNF585A 1 99.0 Weakly correlated
35 ZNF573 1 94.0 Weakly correlated
36 ZNF557 1 15.2 Weakly correlated
37 ZNF528 1 43.0 Weakly correlated
38 ZKSCAN5 1 160.0 Weakly correlated
39 ZKSCAN8 1 160.0 Weakly correlated
40 ZNF324 1 99.0 Weakly correlated
41 ZNF124 1 43.0 Weakly correlated
42 ZNF257 1 0.0 Weakly correlated
43 ZNF140 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 130 87.0 Highly correlated
2 ZIM3 8 87.0 Highly correlated
3 ZFP57 5 87.0 Highly correlated
4 ZNF736 1 43.0 Weakly correlated
5 ZNF324 1 99.0 Weakly correlated
6 ZNF585A 1 99.0 Weakly correlated
7 ZNF534 1 19.6 Weakly correlated
8 ZNF695 1 28.9 Weakly correlated
9 ZNF680 1 28.9 Weakly correlated
10 ZNF793 1 99.0 Weakly correlated
11 ZNF18 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats