ZRdb KZFP & Repeats
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LTR_MER57C2

  • Name
    MER57C2
  • Repbase
    MER57C2
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000866
Description :

MER57C2 may be primate-specific. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaattaaactaaatttggcctgaggctgcctccgtactttgagtccctacgtagcgaactgcaacctaacttagtatgtaaacaaactgnaacctaacttaggagtatattcttgtaacaaatagctgagtctcagccaatcacagcagccgagcttcagccaatcacaggctgccaactgatcagaccatgtccatataaggcaaatgcctcgncgcaccatgcccaaataaggcaaacgccgagctgtaaccaatcaagctgtttctgtacntcacttcctttttctgtctataaatactgcctgcccacgttgctgggtggagctctctgaacctctcctggttctgagngctgcccgattcatgaatcgttctttgctcaaataaactctgctaaatttaatttgtctaaagtttttcttttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 87 87.0 Highly correlated
2 ZNF382 23 99.0 Weakly correlated
3 ZNF766 20 43.0 Weakly correlated
4 ZNF679 10 28.9 Weakly correlated
5 ZNF175 8 94.0 Weakly correlated
6 ZIM3 6 87.0 Highly correlated
7 ZNF589 6 28.9 Weakly correlated
8 ZKSCAN8 6 160.0 Weakly correlated
9 ZNF584 6 99.0 Weakly correlated
10 ZFP57 5 87.0 Highly correlated
11 ZNF394 5 99.0 Weakly correlated
12 ZNF2 5 99.0 Weakly correlated
13 ZNF197 4 99.0 Weakly correlated
14 ZNF101 4 43.0 Weakly correlated
15 ZNF263 4 180.0 Weakly correlated
16 ZNF793 3 99.0 Weakly correlated
17 ZNF680 3 28.9 Weakly correlated
18 ZNF554 3 99.0 Weakly correlated
19 ZNF17 3 69.0 Weakly correlated
20 ZNF350 3 99.0 Weakly correlated
21 ZNF490 2 43.0 Weakly correlated
22 ZKSCAN1 2 160.0 Weakly correlated
23 ZNF597 2 94.0 Weakly correlated
24 ZNF264 2 99.0 Weakly correlated
25 ZFP69B 2 99.0 Weakly correlated
26 ZNF251 2 94.0 Weakly correlated
27 ZNF723 2 15.2 Weakly correlated
28 ZFP37 2 99.0 Weakly correlated
29 ZNF320 2 28.9 Weakly correlated
30 ZNF324 2 99.0 Weakly correlated
31 ZNF707 1 74.0 Moderately correlated
32 ZNF705D 1 28.9 Weakly correlated
33 ZNF18 1 160.0 Weakly correlated
34 ZNF701 1 28.9 Weakly correlated
35 ZNF789 1 99.0 Weakly correlated
36 ZNF792 1 94.0 Weakly correlated
37 ZNF667 1 99.0 Weakly correlated
38 ZNF649 1 28.9 Weakly correlated
39 ZNF585A 1 99.0 Weakly correlated
40 ZNF257 1 0.0 Weakly correlated
41 ZNF555 1 94.0 Weakly correlated
42 ZNF10 1 99.0 Weakly correlated
43 ZNF528 1 43.0 Weakly correlated
44 ZNF519 1 19.6 Weakly correlated
45 ZNF440 1 28.9 Weakly correlated
46 ZNF429 1 28.9 Weakly correlated
47 ZNF124 1 43.0 Weakly correlated
48 ZNF182 1 99.0 Weakly correlated
49 ZNF317 1 99.0 Weakly correlated
50 ZNF343 1 74.0 Moderately correlated
51 ZNF334 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 46 87.0 Highly correlated
2 ZFP57 2 87.0 Highly correlated
3 ZIM3 2 87.0 Highly correlated
4 ZNF680 2 28.9 Weakly correlated
5 ZNF101 1 43.0 Weakly correlated
6 ZNF554 1 99.0 Weakly correlated
7 ZNF701 1 28.9 Weakly correlated
8 ZKSCAN8 1 160.0 Weakly correlated
9 ZNF440 1 28.9 Weakly correlated
10 ZNF707 1 74.0 Moderately correlated
11 ZNF585A 1 99.0 Weakly correlated
12 ZNF589 1 28.9 Weakly correlated
13 ZNF793 1 99.0 Weakly correlated
14 ZNF584 1 99.0 Weakly correlated
15 ZNF197 1 99.0 Weakly correlated
16 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats