ZRdb KZFP & Repeats
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LTR_MER57C1

  • Name
    MER57C1
  • Repbase
    MER57C1
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000867
Description :

MER57C1 is possibly primate-specific. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaattaaatttggcctaaagctgcctccgtacgtagcgaactgtaacctaacttaatatgtaaacaaactgcaacctaacttgagagtatattcttgtaacaagtagccgagtctcggccaatcatagcagccgagctttcagccaatcacaggctgcaaactgctcagacatgtccaaataaggcaaacgccgagctgtaaccaatcaggctatttctgtatgtcacttcctttttctgtctataaatactgcctgcccacgttgctgggtggagctctctgaacctttactggttcagggtgctgcccgattcatgaatcgtttctttgctcaaataaactctgctaaatttaatttgtctaaagtttttcttttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 62 87.0 Weakly correlated
2 ZNF766 10 43.0 Weakly correlated
3 ZNF382 7 99.0 Weakly correlated
4 ZNF175 4 94.0 Weakly correlated
5 ZNF589 3 28.9 Weakly correlated
6 ZNF197 3 99.0 Weakly correlated
7 ZNF680 2 28.9 Weakly correlated
8 ZNF584 2 99.0 Weakly correlated
9 ZNF554 2 99.0 Weakly correlated
10 ZNF534 2 19.6 Weakly correlated
11 ZNF701 2 28.9 Weakly correlated
12 ZNF331 2 94.0 Weakly correlated
13 ZNF18 2 160.0 Weakly correlated
14 ZNF793 2 99.0 Weakly correlated
15 ZIM3 2 87.0 Weakly correlated
16 ZNF716 1 19.6 Weakly correlated
17 ZNF705B 1 28.9 Weakly correlated
18 ZNF789 1 99.0 Weakly correlated
19 ZNF84 1 99.0 Weakly correlated
20 ZNF92 1 28.9 Weakly correlated
21 ZNF679 1 28.9 Weakly correlated
22 ZNF471 1 94.0 Weakly correlated
23 ZNF441 1 43.0 Weakly correlated
24 ZNF432 1 99.0 Weakly correlated
25 ZNF251 1 94.0 Weakly correlated
26 ZNF101 1 43.0 Weakly correlated
27 ZKSCAN8 1 160.0 Weakly correlated
28 ZKSCAN5 1 160.0 Weakly correlated
29 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 26 87.0 Weakly correlated
2 ZKSCAN5 1 160.0 Weakly correlated
3 ZNF793 1 99.0 Weakly correlated
4 ZNF701 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats