ZRdb KZFP & Repeats
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LTR_MER57B2

  • Name
    MER57B2
  • Repbase
    MER57B2
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000864
Description :

The MER57B2 LTR may be simian-specific (present in marmoset). Note thatMER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaattaagtttagcctaaagctgcctccttacatattttaagttcggcctaaaggtttctccgtacatagtgaactgtaacctaactggatgtgtaaacagactgtaacctactcttgtaccaatcaccgagtttcggccaatcacaggcggccaactgttcaaaccgtgttcaaataaggcaaacgccgagctgtaaccaatccggctgtttctgtacctcacttccgttttctgtacgtcactttcctttttctgtccataaatcttctccgaccacgcggcagcgccggagtctctctgaacctattctggttcngggggctgcccgattcgcgaatcgttctttgctcaattaaactctgttaaatttaatttgtctaaagtttttcttttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 68 87.0 Weakly correlated
2 ZNF766 41 43.0 Highly correlated
3 ZNF382 41 99.0 Weakly correlated
4 ZNF680 30 28.9 Moderately correlated
5 ZNF394 16 99.0 Weakly correlated
6 ZNF175 15 94.0 Weakly correlated
7 ZNF679 14 28.9 Moderately correlated
8 ZNF2 13 99.0 Weakly correlated
9 ZNF317 13 99.0 Weakly correlated
10 ZNF263 11 180.0 Weakly correlated
11 ZNF479 11 6.4 Weakly correlated
12 ZNF589 11 28.9 Moderately correlated
13 ZNF559 10 74.0 Weakly correlated
14 ZNF18 8 160.0 Weakly correlated
15 ZNF597 7 94.0 Weakly correlated
16 ZNF584 6 99.0 Weakly correlated
17 ZFP37 6 99.0 Weakly correlated
18 ZNF101 6 43.0 Highly correlated
19 ZKSCAN8 6 160.0 Weakly correlated
20 ZNF197 6 99.0 Weakly correlated
21 ZKSCAN1 6 160.0 Weakly correlated
22 ZNF534 5 19.6 Weakly correlated
23 ZNF324 5 99.0 Weakly correlated
24 ZNF789 4 99.0 Weakly correlated
25 ZNF554 4 99.0 Weakly correlated
26 ZNF251 4 94.0 Weakly correlated
27 ZNF28 4 28.9 Moderately correlated
28 ZNF320 3 28.9 Moderately correlated
29 ZNF701 3 28.9 Moderately correlated
30 ZKSCAN5 3 160.0 Weakly correlated
31 ZNF610 3 28.9 Moderately correlated
32 ZFP69B 2 99.0 Weakly correlated
33 ZNF705B 2 28.9 Moderately correlated
34 ZNF133 2 99.0 Weakly correlated
35 ZNF528 2 43.0 Highly correlated
36 ZNF705D 2 28.9 Moderately correlated
37 ZNF490 2 43.0 Highly correlated
38 ZNF793 2 99.0 Weakly correlated
39 ZNF44 2 43.0 Highly correlated
40 ZNF140 2 99.0 Weakly correlated
41 ZNF257 2 0.0 Weakly correlated
42 ZNF778 2 74.0 Weakly correlated
43 ZNF707 1 74.0 Weakly correlated
44 ZNF75A 1 94.0 Weakly correlated
45 ZNF75D 1 94.0 Weakly correlated
46 ZNF799 1 43.0 Highly correlated
47 ZNF845 1 28.9 Moderately correlated
48 ZNF84 1 99.0 Weakly correlated
49 ZNF682 1 28.9 Moderately correlated
50 ZNF585B 1 99.0 Weakly correlated
51 ZNF547 1 74.0 Weakly correlated
52 ZNF519 1 19.6 Weakly correlated
53 ZNF441 1 43.0 Highly correlated
54 ZNF440 1 28.9 Moderately correlated
55 ZNF429 1 28.9 Moderately correlated
56 ZNF350 1 99.0 Weakly correlated
57 ZNF287 1 99.0 Weakly correlated
58 ZNF284 1 43.0 Highly correlated
59 ZNF264 1 99.0 Weakly correlated
60 ZNF202 1 160.0 Weakly correlated
61 ZIM3 1 87.0 Weakly correlated
62 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 45 87.0 Weakly correlated
2 ZNF766 14 43.0 Highly correlated
3 ZNF680 13 28.9 Moderately correlated
4 ZNF479 5 6.4 Weakly correlated
5 ZKSCAN5 3 160.0 Weakly correlated
6 ZNF589 3 28.9 Moderately correlated
7 ZNF18 2 160.0 Weakly correlated
8 ZNF559 2 74.0 Weakly correlated
9 ZNF701 2 28.9 Moderately correlated
10 ZNF28 2 28.9 Moderately correlated
11 ZNF519 1 19.6 Weakly correlated
12 ZNF44 1 43.0 Highly correlated
13 ZNF440 1 28.9 Moderately correlated
14 ZNF350 1 99.0 Weakly correlated
15 ZNF287 1 99.0 Weakly correlated
16 ZNF597 1 94.0 Weakly correlated
17 ZIM3 1 87.0 Weakly correlated
18 ZNF175 1 94.0 Weakly correlated
19 ZNF202 1 160.0 Weakly correlated
20 ZNF75A 1 94.0 Weakly correlated
21 ZNF705D 1 28.9 Moderately correlated
22 ZNF264 1 99.0 Weakly correlated
23 ZNF534 1 19.6 Weakly correlated
24 ZNF317 1 99.0 Weakly correlated
25 ZNF197 1 99.0 Weakly correlated
26 ZNF679 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF766 43.0 Highly correlated