ZRdb KZFP & Repeats
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LTR_MER57B1

  • Name
    MER57B1
  • Repbase
    MER57B1
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000865
Description :

The MER57B1 LTR may be simian-specific (present in marmoset). Note thatMER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaatcaagtttagcctaaagctgcctccttacatattttaagttcggcctaaaggtttctctgtacatcgtgaactataacctaagtggaggtgtaaacagaccgtagcctactcttgtgccaatcaccgagttttggccaatcaaangtggccaactgttcaaaccgtgttcaaataaggcaaacgccgagctgtaaccaatccggctgtttctgtacctcacttccgttttctgtacgtcactttcctttttctgtccataaatcttcttccaccacgtggctgcgctggagtctctgagcctactctggctcgggaggctgcccgattcgcgaatcgttctttgctcaattaaactcttttaaatttaattcggctgaagtttttcttttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 128 87.0 Weakly correlated
2 ZNF766 47 43.0 Highly correlated
3 ZNF382 46 99.0 Weakly correlated
4 ZNF175 17 94.0 Weakly correlated
5 ZNF589 16 28.9 Moderately correlated
6 ZNF680 14 28.9 Moderately correlated
7 ZNF197 12 99.0 Weakly correlated
8 ZNF584 11 99.0 Weakly correlated
9 ZNF317 10 99.0 Weakly correlated
10 ZNF394 9 99.0 Weakly correlated
11 ZNF251 8 94.0 Weakly correlated
12 ZKSCAN8 8 160.0 Weakly correlated
13 ZIM3 7 87.0 Weakly correlated
14 ZNF18 7 160.0 Weakly correlated
15 ZNF789 7 99.0 Weakly correlated
16 ZNF554 7 99.0 Weakly correlated
17 ZNF2 7 99.0 Weakly correlated
18 ZNF263 7 180.0 Weakly correlated
19 ZNF679 5 28.9 Moderately correlated
20 ZKSCAN1 5 160.0 Weakly correlated
21 ZNF723 5 15.2 Weakly correlated
22 ZNF101 5 43.0 Highly correlated
23 ZNF519 4 19.6 Weakly correlated
24 ZNF701 4 28.9 Moderately correlated
25 ZNF559 4 74.0 Weakly correlated
26 ZNF597 3 94.0 Weakly correlated
27 ZNF479 3 6.4 Weakly correlated
28 ZKSCAN5 3 160.0 Weakly correlated
29 ZNF558 3 99.0 Weakly correlated
30 ZFP37 2 99.0 Weakly correlated
31 ZNF202 2 160.0 Weakly correlated
32 ZNF140 2 99.0 Weakly correlated
33 ZNF182 2 99.0 Weakly correlated
34 ZNF75A 1 94.0 Weakly correlated
35 ZNF585A 1 99.0 Weakly correlated
36 ZNF610 1 28.9 Moderately correlated
37 ZNF43 1 43.0 Highly correlated
38 ZNF823 1 43.0 Highly correlated
39 ZNF879 1 99.0 Weakly correlated
40 ZNF91 1 6.0 Weakly correlated
41 ZNF92 1 28.9 Moderately correlated
42 ZNF343 1 74.0 Weakly correlated
43 ZFP57 1 87.0 Weakly correlated
44 ZFP69B 1 99.0 Weakly correlated
45 ZNF133 1 99.0 Weakly correlated
46 ZNF157 1 99.0 Weakly correlated
47 ZNF234 1 99.0 Weakly correlated
48 ZNF257 1 0.0 Weakly correlated
49 ZNF28 1 28.9 Moderately correlated
50 ZNF324 1 99.0 Weakly correlated
51 ZNF563 1 28.9 Moderately correlated
52 ZNF350 1 99.0 Weakly correlated
53 ZNF425 1 94.0 Weakly correlated
54 ZNF441 1 43.0 Highly correlated
55 ZNF468 1 28.9 Moderately correlated
56 ZNF486 1 8.6 Weakly correlated
57 ZNF506 1 28.9 Moderately correlated
58 ZNF557 1 15.2 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 80 87.0 Weakly correlated
2 ZNF766 11 43.0 Highly correlated
3 ZNF519 3 19.6 Weakly correlated
4 ZKSCAN5 2 160.0 Weakly correlated
5 ZNF554 2 99.0 Weakly correlated
6 ZNF723 2 15.2 Weakly correlated
7 ZNF157 1 99.0 Weakly correlated
8 ZNF251 1 94.0 Weakly correlated
9 ZNF585A 1 99.0 Weakly correlated
10 ZNF680 1 28.9 Moderately correlated
11 ZNF101 1 43.0 Highly correlated
12 ZNF140 1 99.0 Weakly correlated
13 ZNF317 1 99.0 Weakly correlated
14 ZNF823 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF766 43.0 Highly correlated