ZRdb KZFP & Repeats
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LTR_MER57A1

  • Name
    MER57A1
  • Repbase
    MER57A1
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000863
Description :

This LTR was originally reconstructed as MER57B. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaagcgaactaaatatggcctgagaaggactccgtacttctatatttgagtccttgtggacgaactgtaacctagcttaataggcagacaagattgaaaacctaacttaggagtatgcgcctgtaacaatagctgagtcttggccaatcccagcggccatacttcaaccactcatacactgctgagtgttcaaactgtgttcaaataaggcaaacgccgagctgtaaccaatccagctgtttctgtacctcacttccgatttctgtacgtcacttccctttttttgtctataaatttgttctgaccacgaggcanccctggagtctctctgaatctgctgtgattctgggggctgcccgattcgcgaatcgttcattgctcaattaaactcctttaaatttaattcggctgaagtttttcttttaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 106 87.0 Weakly correlated
2 ZNF382 27 99.0 Weakly correlated
3 ZNF317 25 99.0 Weakly correlated
4 ZNF479 21 6.4 Weakly correlated
5 ZNF766 17 43.0 Highly correlated
6 ZNF251 16 94.0 Weakly correlated
7 ZNF789 13 99.0 Weakly correlated
8 ZNF679 10 28.9 Moderately correlated
9 ZNF680 6 28.9 Moderately correlated
10 ZNF101 6 43.0 Highly correlated
11 ZNF175 4 94.0 Weakly correlated
12 ZNF18 4 160.0 Weakly correlated
13 ZNF394 4 99.0 Weakly correlated
14 ZKSCAN5 4 160.0 Weakly correlated
15 ZIM3 3 87.0 Weakly correlated
16 ZNF793 3 99.0 Weakly correlated
17 ZNF597 3 94.0 Weakly correlated
18 ZNF610 3 28.9 Moderately correlated
19 ZNF2 3 99.0 Weakly correlated
20 ZNF28 3 28.9 Moderately correlated
21 ZNF133 3 99.0 Weakly correlated
22 ZNF197 3 99.0 Weakly correlated
23 ZNF584 2 99.0 Weakly correlated
24 ZNF554 2 99.0 Weakly correlated
25 ZNF816 2 28.9 Moderately correlated
26 ZNF585A 2 99.0 Weakly correlated
27 ZNF589 2 28.9 Moderately correlated
28 ZNF674 2 99.0 Weakly correlated
29 ZFP69B 2 99.0 Weakly correlated
30 ZNF792 2 94.0 Weakly correlated
31 ZFP57 2 87.0 Weakly correlated
32 ZNF486 2 8.6 Weakly correlated
33 ZKSCAN1 2 160.0 Weakly correlated
34 ZNF264 2 99.0 Weakly correlated
35 ZNF534 2 19.6 Weakly correlated
36 ZNF263 1 180.0 Weakly correlated
37 ZNF141 1 43.0 Highly correlated
38 ZNF182 1 99.0 Weakly correlated
39 ZNF230 1 28.9 Moderately correlated
40 ZNF75D 1 94.0 Weakly correlated
41 ZNF736 1 43.0 Highly correlated
42 ZNF723 1 15.2 Weakly correlated
43 ZNF707 1 74.0 Weakly correlated
44 ZNF705B 1 28.9 Moderately correlated
45 ZNF248 1 99.0 Weakly correlated
46 ZNF641 1 99.0 Weakly correlated
47 ZNF324 1 99.0 Weakly correlated
48 ZNF605 1 99.0 Weakly correlated
49 ZNF334 1 99.0 Weakly correlated
50 ZNF41 1 99.0 Weakly correlated
51 ZNF441 1 43.0 Highly correlated
52 ZNF480 1 43.0 Highly correlated
53 ZNF558 1 99.0 Weakly correlated
54 ZNF528 1 43.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF549 58 87.0 Weakly correlated
2 ZNF479 7 6.4 Weakly correlated
3 ZNF317 6 99.0 Weakly correlated
4 ZKSCAN5 4 160.0 Weakly correlated
5 ZNF680 3 28.9 Moderately correlated
6 ZIM3 2 87.0 Weakly correlated
7 ZNF585A 2 99.0 Weakly correlated
8 ZNF534 2 19.6 Weakly correlated
9 ZNF28 2 28.9 Moderately correlated
10 ZFP57 1 87.0 Weakly correlated
11 ZNF101 1 43.0 Highly correlated
12 ZNF133 1 99.0 Weakly correlated
13 ZNF18 1 160.0 Weakly correlated
14 ZNF679 1 28.9 Moderately correlated
15 ZNF75D 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats