ZRdb KZFP & Repeats
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LTR_MER57A-INT

  • Name
    MER57A-INT
  • Repbase
    MER57A_I
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000862
Description :

This retroelement lost its mobility ~50 MYA. Note that MER stands forMEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gatggcgtcagaagtgggatccgaagtagagcttctagcgacccccaggagcgccgagtgaccaagcgaggtacccgccgggcccattgtgtccattgctctctcgcagcaactggggatcgtggtaagttctctctcggattccgaagctccacggatttgtgttttgagctctccgagtttntttgagcaaatttctgatccaaactgggttcggaagtcgcgacagaaactggactgggtccaggatcggattggatccgataattaactggcttggatccagttagaggcctcnnatgtctgactgggtcaganagaaactggcagtaaatggcaatactgcagggggtgtaaacttcggctttcggaaattcgcagggatttttgtgttctaccccctttgtttcntttttcttgcgcgcttaggtagggaaaaaaatcattggctaagttgatcaaggggatctgagagccaaagccaanattcgangtaaaaatgggatccttaatttctgaagaactgagtactccttccggcttacntttacatgcataagtattaggccccggaagcagcaaanncttacagaaatggcgaaatcttactaaagataaattacagtggaacgttccaaatgaacaacactgcactttaagaagtgcatttgaaaatgagggctcccgaattagnctcatccagggatgcctattgatgtgcagaagcttctaaaaagatttcaatatttttattgtttaaagactttataaaaggcaaataaaaagcttaagcgactaattgataagaaaaattaaatctgctaaccttttggcttagttactatcccgccccgaaggcgaaaagaaagctatcctagataaagtgtttataaaaggtaggccctcaggtaaagtaggcttgcttctttttcaganctatccatgctgagtccaggcatagagaatgctttctttgccctattccttaatgggctccaccctgaactcagtaattttagctaagaaacagtagctaagttaaaaagaccacctatcgaactaaaatacacctttctggnatttagctggctatcttgaaactcttttgtaaaagaaatttacatctataaaggaaatctccatttntaaggatgtctgcctatgtacattagaaactcttaccattgttttaaatttacataataagtcatacctttgtttaaggtgcttttctggccatcttgtcttaantgaacttttacttacaccatttttttcccttggtttgagcaaatgatgatacaatatttaggcctaaaatcttagctctgtgcttntgagatataaattttctcttgtttcacctaagagtcgtccctttagaaatgcaaatttgttgcctagctaacaattgcttagggcaatgaaacaggtaattggaagattgatagtctgaatggggaaaagaaaaactatttgaaagccggcaaatgaaaatcctttatgaaagctataagatctgcttctgtctgtgtgtctgtatgtctatatgtgttatgtgtatgtgataatatttggtaaataaagctagttttnaaattgttggtaaaatagaaatggcttcaaaattgtcagttaaatataattagatacttgcttgatttgactgtgagcttatgtctttggttttgagcctctggattcnggggtctggacaggtggccatggtgaggcctggagacatgttctcagtgcctagaccancagctacaaggcagagtcaagcccaatatggccccntcttcctctgctnncccagctttgcctcctggccatnctgggaggggttggatcctccaggcatcgtccttcacagctctgtcttctgtcctgagctctacacctggtatgtaaattcaggacccagacgggccctgcccttcatagccntcctgggtgccacgtggctacttgggacccaggatgactgggaagacattagggagggtacctgtgtcatagtttcaaaattcttttcagtaatttaaaatcttaaagtcatgttaaattaagtaatagataatcataaaatgtctgagtcatttgtaagttaaaatactgaaacattaattattaaacataagtttaagtttatatactttggcatcttatttttatatggtatagaaaagctaaatatatttagatctgttaataaacaanaatttgaagaaaacatntttctaaaaaattataaaatggttttcatctacaaatactgatataaaacagttcaaaattacttcctagggttttcactagaaattagggttactaagagttaaaattntaattaatatatgtaattaaaactactagatataagagaaacaattctgtatacagagtgtataaanaaaagcaagatatgtttttggtgaggaaagttataaaggcataaaaatgtgttgttaaaaaattttgtctagtttgaagttacttaaaggtttcaaattgaaggaataaaaaatagatagaaaaactaaaatatagaaagttgaaaaatnttaagagattataaaaggtttatggaaatcttgtgtggtcaaaagntgacagattngatggatttgtttataaggttttattaaaattagctttagtattgataatacactaatacaaaagtaaaatttggttttctcttttgaacaagantttcgtgtagtattaataaganatangtaaaattttttgttcaccttttgagtaaactgcaaaaaagaaaaaagagaagagagaagaagagacagattctgtctcatgctgtctttattaggtcttttgattgtttggaaaactgagtctcctctatcaaagagtaaaggtttttgcttttnaaaatcttttaattatcactttggctaaatgaatgactattattttacggtgacctgtgatcctattttgatcaagtgttttaaacctttgacatatttgacaggcttcccaaaatcaaatttcaanttcaaaattaagtcttttttcgacctctaactttgggatgttacagagggcccctgaagcatccaaaagagagataaacaggcttatttgatatgttaaattacatgggaagcattgtcaaataagaaatgatgtttaaccttcttcgagttatattttnatgaatatgttattaatatgtgttccaaaattgtatgagattcctaaaattctgatatgtctnggtatatgctatcagtcataattatggttattatgttaaattattgtaggccacagaaataaccaaatttccttgtcaattgtgtctttatgaccattttaagtcatttccacagttaattgcttaattctgatgcantttctgaaaacttcacaagcangcaaaatcctagagtattgtgtcttcaaggaggttcatgaaaggatggaaaggaccctgacaagcactcttgaatacaggtttctgataactttaggatcatatcatttggactgggtaagaattcccagaactctaatgaagagactgactggtttataaaactgctaacccaagcaggacaaaaattaattgaataccaagaaaatactttgccagattttcatgctaaatcagccagtactgaaattgttnagatatgcaatttgaatgaactccatggtccaagtcaaattacctatgataacccatcaatnancagtgctatgcacctgaattggagaaacaattggtatttaagaggatataaatccaatgttaagcgtggactcatggagagcctggacggccgcctggtccttcctgagtccttaaagcttccgttattaaaagctctgcactccatgactcatcatggaagagataaaatgatccaaattaaatanatatatattggtgtggtgactgttctaaattgctaaaatggtttatgaccaatgtttggtttgtcaaacccataatcctgggaagacaatcaaaacttcaggtacatttctgctacctgatgggccatttgaacatttatagagggatttcattcaattgccattttcaatgcatgttttctggttgtatagaagctttcccatgcaagaaggccgatgctataacagtagctaaaaggttattagaaaatgtgtttccctcatggggcattcctggagaaatctccagcgatagaggtacttgtttcactggacaagttgtaaaacagttaaataaggtattacagatacaatagcattaggcaaagctaactgaatcgactggattgccttggtcaaaggtattgcagattgatggcaatcagatccacttccagtggaaaacataagttgaccccttatgaaatagtcactggaaggcctatgcccctaataatagaacctcatgtatcttccgctcctaaactctgatatgactaaatgctgcaaggctttaatgcattatgccaaagtgtattttcaccaggtaaaggaagcttttcatgatccaccgactgaggacaatcaaacccttcacgatctagaacccggagattgggtcttctggaaacgacatcagagaaagactgcccttgccacccacactgcagcaaaacttcgggacctcgaaccttgggtccataatctcacaactcagaagggcccctccagactcttggaactgtacacccgttggagaccttaaggtaaagctaaccagggaagtttctccccagaagcagacggcatcctagacgtggacagcttttncccaagatcacggatcaagacttctctgccatcatgaaactcttatctctcaattttttccttgcttatgcctctatgaacaatagaactgaaaagggtctcttgtgtgcactcatggggtatacttttatttgtggaggatttcgcagccaaccttatacatggacaancttatgccttgatagatggaagatgaagggccaatgtgggcgagaaattttaatggtacntttgttgcttcataatcagtcagaaacagaacattggtccactcctcttaacctacatcataggttaaagagaacattgccaggaggccttcactcttctggatgggcatcatttgttaggtctctttttccatggtttggagtaaatgaggcaatgattagaaatttatccctcataataggctctatagcagattctactgcaaaggctatggttgcacaacagactttaaattctcttgctaaagttgtgctagataatagaattgctctagattacctactggctgaacagggaagaatctgtgcagttgctgacacttcttgttgcacatggataaatacatcgggtattatagagactcagttgcaggggattaacgaacaggctgcttggttaaaacgagtagactcttcatctggctcattctttgatctatttgattttagttggtttggttcatggggaccctggctaaggagcatactccaaactcttggtattatcctcctgatagtcataatagtagtctccctggtgcgctgtattctctcaaaagttttaaatgtttgcatgcagccatccgtagaatgtcaaatggtctctcttcggctggaatgacaaaaactcaaagaaatgcgtgatcatgaggacaccgtaacctatgaatgacgtgctgagaccggaaacccaaaatgatggtaactgagagtagcgctaangccctaagttttggtcacactctcacctaagtgagaacctgaccaaaaggggggaatttttaaacaaaattatgggaggccattgttttggactgagctcgtgcactaggccccaacagaccagaccaaaccaaaatggagtcactcatgctaaatgcgacataatcaaactgaaactttaaggaagcagatagatcctaaaacagaccaggttttgtttttctcctgnaaacaggagattccagcacaaggaggtcccctctactctaacccttacaaaaaaanaataacctgaagtccttgttcccaccttacaaaacccactgttctgctatttcccagtgggatttgagaccaaataangtacatttacgatggtgacagtgacatcaatgcctaaagttttggtcaatctctcaaaattgagaggntgaccaaaaggggggaat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 70 99.0 Weakly correlated
2 ZNF766 28 43.0 Highly correlated
3 ZNF175 25 94.0 Weakly correlated
4 ZNF680 23 28.9 Moderately correlated
5 ZNF589 18 28.9 Moderately correlated
6 ZNF679 18 28.9 Moderately correlated
7 ZNF723 18 15.2 Weakly correlated
8 ZNF789 18 99.0 Weakly correlated
9 ZNF549 18 87.0 Weakly correlated
10 ZNF317 16 99.0 Weakly correlated
11 ZNF584 15 99.0 Weakly correlated
12 ZIM3 14 87.0 Weakly correlated
13 ZKSCAN8 12 160.0 Weakly correlated
14 ZNF479 12 6.4 Weakly correlated
15 ZNF197 11 99.0 Weakly correlated
16 ZNF793 10 99.0 Weakly correlated
17 ZNF429 9 28.9 Moderately correlated
18 ZNF263 8 180.0 Weakly correlated
19 ZNF534 8 19.6 Weakly correlated
20 ZNF75D 8 94.0 Weakly correlated
21 ZNF878 7 43.0 Highly correlated
22 ZFP57 7 87.0 Weakly correlated
23 ZNF705B 6 28.9 Moderately correlated
24 ZNF394 6 99.0 Weakly correlated
25 ZNF610 5 28.9 Moderately correlated
26 ZNF490 4 43.0 Highly correlated
27 ZNF182 4 99.0 Weakly correlated
28 ZNF28 4 28.9 Moderately correlated
29 ZNF554 4 99.0 Weakly correlated
30 ZNF585A 4 99.0 Weakly correlated
31 ZNF101 4 43.0 Highly correlated
32 ZNF92 4 28.9 Moderately correlated
33 ZNF485 3 94.0 Weakly correlated
34 ZFP37 3 99.0 Weakly correlated
35 ZNF18 3 160.0 Weakly correlated
36 ZNF30 3 94.0 Weakly correlated
37 ZNF2 2 99.0 Weakly correlated
38 ZNF735 2 28.9 Moderately correlated
39 ZNF567 2 99.0 Weakly correlated
40 ZNF595 2 43.0 Highly correlated
41 ZNF140 2 99.0 Weakly correlated
42 ZNF716 2 19.6 Weakly correlated
43 ZNF350 2 99.0 Weakly correlated
44 ZNF506 2 28.9 Moderately correlated
45 ZNF707 2 74.0 Weakly correlated
46 ZNF320 2 28.9 Moderately correlated
47 ZNF324 2 99.0 Weakly correlated
48 ZNF160 2 74.0 Weakly correlated
49 ZNF765 1 8.6 Weakly correlated
50 ZNF726 1 28.9 Moderately correlated
51 ZNF705D 1 28.9 Moderately correlated
52 ZNF730 1 19.6 Weakly correlated
53 ZNF141 1 43.0 Highly correlated
54 ZNF135 1 94.0 Weakly correlated
55 ZNF641 1 99.0 Weakly correlated
56 ZNF133 1 99.0 Weakly correlated
57 ZNF786 1 99.0 Weakly correlated
58 ZNF124 1 43.0 Highly correlated
59 ZKSCAN5 1 160.0 Weakly correlated
60 ZNF823 1 43.0 Highly correlated
61 ZNF85 1 28.9 Moderately correlated
62 ZKSCAN1 1 160.0 Weakly correlated
63 ZNF8 1 99.0 Weakly correlated
64 ZFP30 1 99.0 Weakly correlated
65 ZNF565 1 99.0 Weakly correlated
66 ZNF432 1 99.0 Weakly correlated
67 ZNF43 1 43.0 Highly correlated
68 ZNF471 1 94.0 Weakly correlated
69 ZNF486 1 8.6 Weakly correlated
70 ZNF547 1 74.0 Weakly correlated
71 ZNF274 1 99.0 Weakly correlated
72 ZNF26 1 99.0 Weakly correlated
73 ZNF558 1 99.0 Weakly correlated
74 ZNF563 1 28.9 Moderately correlated
75 ZNF701 1 28.9 Moderately correlated
76 ZNF568 1 99.0 Weakly correlated
77 ZNF257 1 0.0 Weakly correlated
78 ZNF202 1 160.0 Weakly correlated
79 ZNF597 1 94.0 Weakly correlated
80 ZNF607 1 43.0 Highly correlated
81 ZNF169 1 94.0 Weakly correlated
82 ZNF671 1 94.0 Weakly correlated
83 ZNF14 1 69.0 Weakly correlated
84 ZNF700 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF789 17 99.0 Weakly correlated
2 ZNF723 13 15.2 Weakly correlated
3 ZIM3 6 87.0 Weakly correlated
4 ZNF793 6 99.0 Weakly correlated
5 ZNF479 6 6.4 Weakly correlated
6 ZNF382 6 99.0 Weakly correlated
7 ZNF429 6 28.9 Moderately correlated
8 ZNF680 5 28.9 Moderately correlated
9 ZNF534 5 19.6 Weakly correlated
10 ZNF585A 4 99.0 Weakly correlated
11 ZFP57 3 87.0 Weakly correlated
12 ZNF101 3 43.0 Highly correlated
13 ZNF75D 2 94.0 Weakly correlated
14 ZNF490 2 43.0 Highly correlated
15 ZNF705B 2 28.9 Moderately correlated
16 ZNF766 2 43.0 Highly correlated
17 ZNF567 2 99.0 Weakly correlated
18 ZNF595 2 43.0 Highly correlated
19 ZNF85 1 28.9 Moderately correlated
20 ZKSCAN5 1 160.0 Weakly correlated
21 ZNF320 1 28.9 Moderately correlated
22 ZNF506 1 28.9 Moderately correlated
23 ZNF735 1 28.9 Moderately correlated
24 ZNF485 1 94.0 Weakly correlated
25 ZNF471 1 94.0 Weakly correlated
26 ZNF671 1 94.0 Weakly correlated
27 ZNF584 1 99.0 Weakly correlated
28 ZNF317 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF382 99.0 Weakly correlated
2 ZNF429 28.9 Moderately correlated
3 ZNF793 99.0 Weakly correlated