ZRdb KZFP & Repeats
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LTR_MER57-INT

  • Name
    MER57-INT
  • Repbase
    MER57I
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000890
Description :

MER57-int ERV is flanked by various MER57 subtype LTRs. Note that MERstands for MEdium Reiteration frequency interspersed repeat. As such,MERs as a group are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gatggtgtcagaagcgggatccgaagtagagcttctagcgacccccaggagcgctgagtgaacaangcaaggtacctgcaggacccacttgtgtccattgatctctcggagcagctggggatcgtggtaagttctctctcggatttcggagctccacggatttgtgttttgagctctccgagtttctttgagcaaatttctgatccaaactgggtttggaagtcgcgacagaaactggactgggtccaggancggatttgatccggtaattaactggcttggatccagttagaggcctcttacatctgactgggtcagaaagaaactggtagtaaacggtaatattgcaggggttgtaaaatttggcttttgaaaattcacagggatttttgtgttctacccctttgtttcatttttcttgcgcgcttaggtaggaaaaaatcattggctaagttaatcaagggaacctgagagtaaagccaatattttaggtaaaaatgggatccttaatttctggaaaactgagttccttctggcttatacacgcgcgnncgttaggcccgggaagcagcgaagtcttacagaaatggcaaaatcttactaaagataacttacagtggaacgttccgaatgaacaacaatgcactgaagtgcatttaaaaatgagggctcccaaattagtctcatctagggatgcctattgatatgcagaagcttctaaaaagatttcagtatttttatttaaagactttacgaaaggcaaataaaaagcttaagcgactaattgattaaaaaattaaatctgctaaccttttagcttagttactatcccgatccaaaggaaatagactgcagcaccaattggctgactttgggtaagtaatggggtacattttacctgagtaaaggatgggattgggttagaggccctcccctcagtaaagtccctcttggttaaaaatggatttggcactatgggatgttaaccgctattctctttggattaatctgccttgcactctttgctgacggctgtgggtgacaggattaggcatgtacaggatcgcgggacatggggagcttttttctccccaaaaggggaaacttgagagctgatgggactgctggaaaagatcccttcgcgaccgacaagcggccgcctgaacttttgattcagtgtcgctgcaagtgggtctttctctggcctccctgagctcctcgccttccccaccctgccgcaggcaatgcttttctctctttctctcctttccctttcctatcttttctgttactcagggcgaccatcttgcccagagaccacatgttgaaactcctggtcggaggttggattaaagatgacagggcccaaccgggggcaagtttgagccttgccagttcgatattgggcgctaagcagagtggctaatgtctatgttttgtcacacgtattttgctctggccagaatggaaaatgttaatttggttnccccatgcaaccnnttgggcggcaacttgcaaaattgagaggcttttgcctgtggttccatgaaacagaaaaagatgattttcctttgtgntgcggcttggcccccagggctatggtgcggcgagcngggtcactagggccgctcagggaaagggaacccagaagcctggcatgccggcaaaagggtaagaatttcttaccagtcagacttctggcctctctctctctgtgcaaaccggttgaatgaatggtaaaaatcactgtttatctcctctgcaaagttttgattaatgggaaaaaggattcgtgaggctagtcttaagctgtagcgaatctggtgtgctttgtgcgtctttctgtatcgttctgtcataaagaggggtaccttaggatagaacgcgggcttaggaccccataagctcgctgttcaagacggcccagcaaactggtcagtnacaaactttgctgcaggtccctgaaacaaacaaaaaaactggatgaggtctccatcttgttttatgtccttgggagcttgaccttgtaaccacgtggcggtactttctcttggtctccgccatccagggaacaggaattttggggttcatgtcatagttagctctaaaaattatcttgagtagttaaaagcctttgcaagctcaaaattgactgctctagactccttctgggaagagcaatggaaactgcccaatgctgtagctcagcagctaaggctttgccattttacaatggcggcccgggttcaatcctggcttagggaatgagtactttctggttgatatctgtgtgacctttaccatttgctgattctcttcccctccatgaacaacttctagcttcccttcttaaatcttcctttctctgagctacctttaaagattctagattttgtaaaaactgcttaccacctctttgaaaatacctcgtacactcgcggttaagtcataaccttagttgaggcttgttggtttcacctgtgaggttacttttggtaaagttcaaaagccagaaatattggccgcttggcntggctaaagtcgggtaataagggatttaaaaggacttttncttaaagagcgctatggttaaaagtcagcttaattaaaagtggatatccaagctataggtatatttaaaaggcctttatgtttttttttctcttcttggatcttgtttttctggaaaaggtttttttcttctcagtcgactgaattatttttctccattttgtcttnncgccactcttaatgcacgcatgagaggccctaagataacttctaacagcctgggactccttgggaaaaacagaggaggcgccacagaccccgttttgggaaaaanctctgttttcctcatggaaccccaggaattgaaagcggatagatccctctcaaaatctaaggctctgttctgttttgcattgcgttatctgacgnttttgacttttgggggtatcagaaattacttcgcattatgagagagctttggtgtgtaataactaggtaggaaatatacttttggggatggctaatggcagttatgggggatactcggctctttgcacgtttggatcagagaagcatgctcttggccacctggaaggtatggaaatgtccccaccccccactgagagataagactcccatgggggatgggctgatcgcagaatgggctgattggctttgggttgctttgcaatgaaatgcacggtaaaatcattgcactgtcttnttccatagcatttccctctttttggggatccaggatccggtataaaaatgggacccttaattttggggatctgtttgccttccagctgtgcctgcttattaggccctagaaactgcatgctttcctggccctgttcctccaagggctccaccctgaagccagtaatccaattaagaaacttaaaaactggcaaatgaaaaatcttacaactactggatcttcttctgtctgtctgtgtagttatatatgtgttgtgtgtgtgatgtttatataaaagagctctaattaattggcttaaagaaaaataagcgcttaaatcaaatattttgaaagaaaaataaaaactgtaatgccttttagttcacgtgactttagtaatctttgggaaataaaaacagctttnaaagattattggtaaaataaagacatttggtctaaattangcaggtcagatattaggtttgctaaatgctttaaggtcataaactgcttctttgacttttgaaaattgttcaacttacctgctttggagccattagattctaggtaaggcctggggacatgtggagttagccatgcccctagctatgctggaaagagtcagaccttatctgcacttctgtctggtgtcctaggctccacacctagtacataattaaaatnacttaccaggtttttcaccaaaantaaaaattgctaagagttaccattataacatgtaattgagactactgaaaaaaacagttttacatgcaaggtgtgtgaggaaagtgaaatgtgtttttggtaaaagattataagaaggcatgggaatgtaaatttttgcctagtttagagggttaaaggattgttttaaattagataagataaagctaaaggtttgaacaagttgtggaaggtttgtaaaaattaatcttgtaaaagaaattctgtgtgtgaacatattggctaaatttaaaggggtattattcggttttttccgtaaattgaacattggaataaaagcacaacagggttttcttagagcactgatctgctctttaacaaaaatttgtaaagggttataaaaggtttatgagaatctcaccttatggtcaaactgattaagattggatagatttgtctataaggttttattaaaaattggggttgacattaatagtacactaatgcaagggtgaaatttggctttctctcttgaacaagattttcatgtaatattaaaggataatgaaagatttttgtttgccttttgaataaactacngaaaaagaagggaaagacaagagacagattgtttggaaagctaagtcttccctctatcaatgagtaaaggtttttgcctttttaaaatttttgagtcatcattttggctaaatgaatgacttatggtgacctggaattctatttcataatatcaagtgttttaaacctttaacatatttgataggcttcccaaaatcaaatttcagcttcaaaattnngtcttttctgacctctaactttgggatgctacagagggcccctgaagcatccaaaagagaggtaaacaggattatttgacatgttaagttacatgggaagcattgtcaaaataaaaataatgtttaaccttcttcaggttatattttagtgaatgatattaatatatgttccaaaattgtatgggatttctaaaattctaatatgtctgagtatatgctatcaatcataattatggttattatgttaagttattgtagaccacagaaataaccaaatttccttgtcaattgtgtctttaactatgactatttaaagtcatttccacagttaattgcttaatgctgatgcagtttctgaaaacttcacaagcacgcaaaatcctagaatatggtgtcttttaggaggttcatgaaaggatggaaaggaccctgaaaagcactcttgaatacaggtttctgataactttagaatcatatcatttggactgggtaagaattcctggaactttaatgaaaagactgactggtttataaaactgctaacccaagtagaacaaaaattaattgaataccaagaaaatactttgccagattttcatgctaaatcagccgatactgaaattgtttagatatacaatttgaatgaactccatggtctaagtcaaattacctatgataacccatcagttatcagtgctatgcacctaaattggagaaacaactggtattcaagaggacataagtccaatgttaagcatggactcatggagaaccaggacggccgccttgtccttcctgagtccttaaagcttttgttattaaaagttctgcattccatgactcatcatggaaaagataaaatgatccaaattaaatatatattggtgtggtgacttataaattgctaaaatagtttataaccaatgtttggtttgtcaaacccatattcctgggaagacaatcaaagcttcaggtacatttggctacctgatgggccatttaaacatttataaagggatttcattcaattgtcattttcaatgcatgttttctggttgtataaaagctttcccatgcaagagggctgatgttataacagtagattattatgccacagtgtattttcaccaggtaaagaaagctttttatggttcactgactgaggacaatcaaccccttcacaatctagaacccgaagattggatcttctgagaacatcagagaaagactgtccttgccatccacactgcagcaaaacttcgggaccttgaaccttgggttcataatctcacaactgagaagggtccctccacactcttggaactgtacacccattggaacccttaaggtaaagctaaccagggaagtttctccccagaagaagatggcatccttgatgtgaacagcttttcccaagatcacggatcaagacttctctactatcatgagactcttatctttgaatattttttccttgcttatgcctctatgaacaatagaagtgaaaagggggtctgttgtgtgcacttatggggtatacttttatttgtgaaggattttgcagccagccttatacatggataaccttatactttgatagataaaagatgaaggcccaatgtaggtgagaaactttaatggtacatacgttgcctcataatcagtcagaaacagaacattggttcactcctcttaacccacatcatgggttaaagagaacattgccaggaggccttcactcttctagaagggcatcatttgttaggtcctttttccatggtttggagtaaaagaggcaatgattagaaatgtatccctcatgataggctctatagcagattctactgtaaaggctatggttacacaacagactttaaattctcttgtgaaagttatgctaaataatagaattgnnncgnnnnnnnnnctggctaaacagagaagtatctgtgcagctgctggcacttgtggcctatggagaaatacatcanattaggtattatagagattcagttgtaggggattaacgaagagaccgcttagttaagcgagtagactctttatctagctcattctttgatctatttgattttaggtggtttggtttatggggaccctgggtaaggagcatactccaaactcttggtattatcctcccgatagtcataatagtagtctccctggtgcgctgtattctctcaaaggttttaaatgtttgcatgcagccatctctagaatgtcaaatggtctctcttcaactggaatgacaagagctgaaagaaatgtgcgaccatgaggacaccgtaacctatgaatgacgtgctgagaccggaaacccaaaatgatggtaactgagagtggcgctaaggccctaagttttggtcacactctcacctaagtgagaacctgaccaaaaagggggaattttttaaaacaaaattatgggaggccattgttttggactgagctcatgcactaggccccaacagaccaaaccaaaccaaaatggagtcactcgtgctaaatgtgacataatcaaactaagactttaaggaaacacatagatcctagaacagaccaggttttgtttttctcctgtaaacaggacgttccagcataaggaggtaccctctactcnnnnnnncgcgnnnnnnnnncgnnncgaagtccttgttcccaccttgcaaaacccactgttctactgtttcccagtgggtttcaagaccaaataagtacatttacgatggtgatagtgacatcaatgactaaagttttggtcaatctctcaaaattgagaaaatgaccaaaaggggggaat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 75 99.0 Weakly correlated
2 ZNF486 50 8.6 Weakly correlated
3 ZNF549 30 87.0 Highly correlated
4 ZNF766 28 43.0 Weakly correlated
5 ZNF324 20 99.0 Weakly correlated
6 ZNF610 16 28.9 Weakly correlated
7 ZNF547 16 74.0 Moderately correlated
8 ZNF175 16 94.0 Weakly correlated
9 ZNF789 16 99.0 Weakly correlated
10 ZIM3 15 87.0 Highly correlated
11 ZNF558 15 99.0 Weakly correlated
12 ZNF394 14 99.0 Weakly correlated
13 ZNF251 14 94.0 Weakly correlated
14 ZNF595 13 43.0 Weakly correlated
15 ZNF554 13 99.0 Weakly correlated
16 ZFP37 13 99.0 Weakly correlated
17 ZNF534 11 19.6 Weakly correlated
18 ZNF317 11 99.0 Weakly correlated
19 ZNF589 10 28.9 Weakly correlated
20 ZNF197 9 99.0 Weakly correlated
21 ZNF2 8 99.0 Weakly correlated
22 ZKSCAN8 8 160.0 Weakly correlated
23 ZNF793 8 99.0 Weakly correlated
24 ZNF701 7 28.9 Weakly correlated
25 ZNF585A 6 99.0 Weakly correlated
26 ZNF33A 6 99.0 Weakly correlated
27 ZNF679 6 28.9 Weakly correlated
28 ZNF584 6 99.0 Weakly correlated
29 ZNF133 6 99.0 Weakly correlated
30 ZNF506 5 28.9 Weakly correlated
31 ZNF723 5 15.2 Weakly correlated
32 ZNF18 5 160.0 Weakly correlated
33 ZNF101 5 43.0 Weakly correlated
34 ZFP69B 5 99.0 Weakly correlated
35 ZNF8 5 99.0 Weakly correlated
36 ZNF263 4 180.0 Weakly correlated
37 ZNF257 4 0.0 Weakly correlated
38 ZNF680 4 28.9 Weakly correlated
39 ZNF169 4 94.0 Weakly correlated
40 ZNF816 4 28.9 Weakly correlated
41 ZFP57 4 87.0 Highly correlated
42 ZNF479 4 6.4 Weakly correlated
43 ZNF669 3 43.0 Weakly correlated
44 ZNF528 3 43.0 Weakly correlated
45 ZNF92 3 28.9 Weakly correlated
46 ZNF429 3 28.9 Weakly correlated
47 ZNF30 3 94.0 Weakly correlated
48 ZNF682 2 28.9 Weakly correlated
49 ZFP28 2 99.0 Weakly correlated
50 ZNF85 2 28.9 Weakly correlated
51 ZNF441 2 43.0 Weakly correlated
52 ZNF43 2 43.0 Weakly correlated
53 ZNF136 2 74.0 Moderately correlated
54 ZNF248 2 99.0 Weakly correlated
55 ZNF707 2 74.0 Moderately correlated
56 ZNF28 2 28.9 Weakly correlated
57 ZNF141 1 43.0 Weakly correlated
58 ZNF202 1 160.0 Weakly correlated
59 ZNF705B 1 28.9 Weakly correlated
60 ZNF716 1 19.6 Weakly correlated
61 ZNF19 1 99.0 Weakly correlated
62 ZNF727 1 19.6 Weakly correlated
63 ZNF736 1 43.0 Weakly correlated
64 ZNF674 1 99.0 Weakly correlated
65 ZNF786 1 99.0 Weakly correlated
66 ZNF140 1 99.0 Weakly correlated
67 ZNF124 1 43.0 Weakly correlated
68 ZNF878 1 43.0 Weakly correlated
69 ZFP14 1 99.0 Weakly correlated
70 ZNF587 1 28.9 Weakly correlated
71 ZNF485 1 94.0 Weakly correlated
72 ZNF530 1 28.9 Weakly correlated
73 ZNF471 1 94.0 Weakly correlated
74 ZNF44 1 43.0 Weakly correlated
75 ZNF557 1 15.2 Weakly correlated
76 ZNF583 1 99.0 Weakly correlated
77 ZNF425 1 94.0 Weakly correlated
78 ZNF350 1 99.0 Weakly correlated
79 ZNF224 1 69.0 Weakly correlated
80 ZNF331 1 94.0 Weakly correlated
81 ZNF605 1 99.0 Weakly correlated
82 ZNF607 1 43.0 Weakly correlated
83 ZNF613 1 99.0 Weakly correlated
84 ZNF616 1 43.0 Weakly correlated
85 ZNF490 1 43.0 Weakly correlated
86 ZNF677 1 99.0 Weakly correlated
87 ZNF225 1 74.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF789 13 99.0 Weakly correlated
2 ZNF595 10 43.0 Weakly correlated
3 ZIM3 5 87.0 Highly correlated
4 ZNF101 3 43.0 Weakly correlated
5 ZNF723 3 15.2 Weakly correlated
6 ZNF486 3 8.6 Weakly correlated
7 ZNF585A 3 99.0 Weakly correlated
8 ZNF534 3 19.6 Weakly correlated
9 ZNF793 3 99.0 Weakly correlated
10 ZNF680 2 28.9 Weakly correlated
11 ZNF816 2 28.9 Weakly correlated
12 ZNF558 2 99.0 Weakly correlated
13 ZNF43 2 43.0 Weakly correlated
14 ZNF382 2 99.0 Weakly correlated
15 ZNF766 2 43.0 Weakly correlated
16 ZNF257 2 0.0 Weakly correlated
17 ZNF554 2 99.0 Weakly correlated
18 ZNF587 1 28.9 Weakly correlated
19 ZNF605 1 99.0 Weakly correlated
20 ZNF607 1 43.0 Weakly correlated
21 ZNF506 1 28.9 Weakly correlated
22 ZNF251 1 94.0 Weakly correlated
23 ZNF485 1 94.0 Weakly correlated
24 ZNF175 1 94.0 Weakly correlated
25 ZNF225 1 74.0 Moderately correlated
26 ZNF589 1 28.9 Weakly correlated
27 ZNF441 1 43.0 Weakly correlated
28 ZNF33A 1 99.0 Weakly correlated
29 ZNF317 1 99.0 Weakly correlated
30 ZNF682 1 28.9 Weakly correlated
31 ZFP14 1 99.0 Weakly correlated
32 ZNF197 1 99.0 Weakly correlated
33 ZNF674 1 99.0 Weakly correlated
34 ZNF479 1 6.4 Weakly correlated
35 ZNF610 1 28.9 Weakly correlated
36 ZNF584 1 99.0 Weakly correlated
37 ZNF141 1 43.0 Weakly correlated
38 ZNF140 1 99.0 Weakly correlated
39 ZNF136 1 74.0 Moderately correlated
40 ZNF133 1 99.0 Weakly correlated
41 ZFP57 1 87.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF595 43.0 Weakly correlated