ZRdb KZFP & Repeats
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LTR_MER54A

  • Name
    MER54A
  • Repbase
    MER54A
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000860
Description :

MER54A has 5 bp TSDs. Its orientation has been reversed from theoriginal. It belongs to a group that includes MER73, MER74, MER88 andLTR53. Note that MER stands for MEdium Reiteration frequencyinterspersed repeat. As such, MERs as a group are a grab bag of DNAtransposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagtgaattcttataattttatgttgcctcggcatccattttgaatataagttngactttctcataccagaagcagggcttagtcacccttgacacagtttccagttctccgcctcctcccagttcctcaatgtggtcgatccagatatctgccttatacaaccgcctcctggtgaccacctccctatgggacagctagatacaacctacttgactcgccccactgacccccacaccccgcatggactgcgcagatatgccgcagtgaccacctctcagtcacagcgtgaccccacggaactcgtgcctgcttgctctaaacccaccaattagaactccccgcgggaaacctgcttgggtaacgccctggaccccaataaaggcttcggcccacaggtccctctctctctctctctcgctccccacccgctggttgagcgcgcgtgtcccggacggctccccccttcccgttggccctgcgaggcgtgctgccctcttctctctgggatctgtaagtaataaactgcttctgttatttcacgtgttttgttgtgttgcctcctctgtgtctcacctgaccgacacacccgaacctaactctcctcccggtcagggctctcctagagagtggctatcttggtaggaataaactggacacaggtcagacaagagccacaagggcgtctgccagtataaacaagtttcctgtgagagggacacctggtcacgggtcggacacttaggcattaggccgtccgccaggataaagaagtatcccgtgaaaggcacactgtaaacatccacgaccacntcccctggagccccgtcagggcagggctagagtttatagccactctccagagagagacctcaagaccaaattagaggaaaatacaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 76 99.0 Weakly correlated
2 ZNF766 40 43.0 Weakly correlated
3 ZNF320 30 28.9 Weakly correlated
4 ZKSCAN8 26 160.0 Weakly correlated
5 ZNF589 24 28.9 Weakly correlated
6 ZNF584 22 99.0 Weakly correlated
7 ZNF175 22 94.0 Weakly correlated
8 ZKSCAN1 21 160.0 Weakly correlated
9 ZNF197 17 99.0 Weakly correlated
10 ZNF18 13 160.0 Weakly correlated
11 ZNF274 13 99.0 Weakly correlated
12 ZNF705D 10 28.9 Weakly correlated
13 ZNF705B 10 28.9 Weakly correlated
14 ZNF479 10 6.4 Weakly correlated
15 ZNF169 9 94.0 Weakly correlated
16 ZNF394 9 99.0 Weakly correlated
17 ZNF2 9 99.0 Weakly correlated
18 ZNF263 8 180.0 Weakly correlated
19 ZNF679 8 28.9 Weakly correlated
20 ZNF610 7 28.9 Weakly correlated
21 ZFP37 6 99.0 Weakly correlated
22 ZNF75D 5 94.0 Weakly correlated
23 ZNF534 5 19.6 Weakly correlated
24 ZNF680 5 28.9 Weakly correlated
25 ZFP69B 4 99.0 Weakly correlated
26 ZNF823 4 43.0 Weakly correlated
27 ZNF701 3 28.9 Weakly correlated
28 ZNF558 3 99.0 Weakly correlated
29 ZNF554 3 99.0 Weakly correlated
30 ZNF597 2 94.0 Weakly correlated
31 ZNF682 2 28.9 Weakly correlated
32 ZNF808 2 19.6 Weakly correlated
33 ZNF490 2 43.0 Weakly correlated
34 ZNF93 2 8.6 Weakly correlated
35 ZNF317 2 99.0 Weakly correlated
36 ZNF257 2 0.0 Weakly correlated
37 ZNF251 2 94.0 Weakly correlated
38 ZNF485 2 94.0 Weakly correlated
39 ZNF33A 2 99.0 Weakly correlated
40 ZNF133 2 99.0 Weakly correlated
41 ZNF101 2 43.0 Weakly correlated
42 ZIM3 2 87.0 Highly correlated
43 ZNF84 1 99.0 Weakly correlated
44 ZNF780A 1 43.0 Weakly correlated
45 ZNF26 1 99.0 Weakly correlated
46 ZNF177 1 94.0 Weakly correlated
47 ZNF184 1 99.0 Weakly correlated
48 ZNF723 1 15.2 Weakly correlated
49 ZNF707 1 74.0 Moderately correlated
50 ZNF224 1 69.0 Weakly correlated
51 ZNF8 1 99.0 Weakly correlated
52 ZNF91 1 6.0 Weakly correlated
53 ZNF264 1 99.0 Weakly correlated
54 ZNF284 1 43.0 Weakly correlated
55 ZNF675 1 8.6 Weakly correlated
56 ZNF616 1 43.0 Weakly correlated
57 ZNF28 1 28.9 Weakly correlated
58 ZNF599 1 99.0 Weakly correlated
59 ZNF337 1 43.0 Weakly correlated
60 ZNF573 1 94.0 Weakly correlated
61 ZNF560 1 43.0 Weakly correlated
62 ZNF41 1 99.0 Weakly correlated
63 ZNF425 1 94.0 Weakly correlated
64 ZNF445 1 99.0 Weakly correlated
65 ZNF471 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF320 15 28.9 Weakly correlated
2 ZNF705D 7 28.9 Weakly correlated
3 ZNF705B 6 28.9 Weakly correlated
4 ZNF479 6 6.4 Weakly correlated
5 ZNF382 6 99.0 Weakly correlated
6 ZNF169 5 94.0 Weakly correlated
7 ZNF263 4 180.0 Weakly correlated
8 ZNF589 3 28.9 Weakly correlated
9 ZNF584 3 99.0 Weakly correlated
10 ZNF274 3 99.0 Weakly correlated
11 ZNF534 3 19.6 Weakly correlated
12 ZNF823 3 43.0 Weakly correlated
13 ZNF197 3 99.0 Weakly correlated
14 ZNF257 2 0.0 Weakly correlated
15 ZNF679 2 28.9 Weakly correlated
16 ZNF75D 2 94.0 Weakly correlated
17 ZNF490 1 43.0 Weakly correlated
18 ZIM3 1 87.0 Highly correlated
19 ZKSCAN1 1 160.0 Weakly correlated
20 ZNF597 1 94.0 Weakly correlated
21 ZNF599 1 99.0 Weakly correlated
22 ZNF554 1 99.0 Weakly correlated
23 ZNF175 1 94.0 Weakly correlated
24 ZNF780A 1 43.0 Weakly correlated
25 ZNF317 1 99.0 Weakly correlated
26 ZNF2 1 99.0 Weakly correlated
27 ZNF675 1 8.6 Weakly correlated
28 ZFP37 1 99.0 Weakly correlated
29 ZNF485 1 94.0 Weakly correlated
30 ZNF33A 1 99.0 Weakly correlated
31 ZNF766 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats