ZRdb KZFP & Repeats
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LTR_MER52D

  • Name
    MER52D
  • Repbase
    MER52D
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000858
Description :

MER52D is the longest LTR variant associated with MER52-int. Note thatMER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatgttantgatggcagcggcgggccgtccggagcggccgctgccatcacgccggctgcagcggggaggcgcgagcggtggcggcaggagcggctgcgggagcagcagtggcggcggtgggacccctgtgccccgcgtcccctgtgccccgcgtccccgaggcagccgactgcgccgcccccaccctcgcgcggccgggcgggacccgctcccaggcccggagcctccgccgctccggaccctggccccgcgtcgccgctctcgcccgccgccgctgcggggagggcgcggggaggacggcagagctgggccccgggcgctgccacgccccacggagccggcgggagccagggacaagtgggagcccccccggagcccgccgccctgggggccgccgcgatggggccgggccgagtcgcccgccggcgggggagcagcgcggtcgggcacggaggggcgggcagagaggggcccagcgaggacctggagcccccgccccaggctgcgaggaggcgcggccggggctgcacgctccacggagccggcgggagccagggagcaggcgggagccccgccccttccgagttggcggggcgggagctcccgggcgcagctgcagccgcccagccgcggctgcggacccgggcatctctgcgctctcgggggcccgggaaggccccccctgcccccgcaggctcggaggtgcctgctcccgctgcctggcctctccccgctcccggcgcccgctccgatctcggagcaaggttggggccgagcccgggcgctgtcgcagcccggccgggtgtgcgcacgctcggggcagcgctgacacgccagccccctgccgcctcggccccctccggactttgggcgccgacgagcacgggagggaggccgagggggggctgagggcggctcggcgctggcctgcaggcgccccttggcacgaacagcctgggcgccatggacggcggcaggaggcagacaggctcctgggcggaagggggcgggtccccggtgaagccccaccttcaggccagggagggcctgaagcctgggggccgggctgccagtcccgcggaccggagtgggaacttgtggtgccttttcctgggcccgcccatggccgcccatggaccaatcggcacgcacttcctcccctctgaggcccataaaagccccgggctcagccagaccagagacagagntgcanagaggacctacccgcagagagncgagggctctgctagagctgaggagacgacgggacgaccagctgcagagnaggagctacccactccagggcctcctctctgctgagagctgaagactcgncgggacgacctgcctgcagagaggagctaccctctctgctgagagctgaacactcgtcgggacaccctggctgcggagaggagctgcccactgcgggtctcctctgagctgttctatcgctcaataaagctcctcttcgtcttgctcaccctccacttgtctgcgtacctcattcttcctggncgcaggacaagaactcgggacccgccgaatggcggggctaaaagagctgtaacacaaacagggctgaaacatgccccttgctcgccacgttgcgggtgacaannnnnnnnnnnnnnnnnagagaaggagagaagagctgcggcccttcggggagcccagacctgggagctccccgagccagggctgtgactccctctttggggccctgcggttcctggcgtctccaagcttccgggcgccaccgcgcattccccggtgccagccgtggaagctgcttgcggtgcgcctggtccagccgcagcctcgcagagagccggcgcccgtgccggcacctggagctgcccgccccgctgcagcagccggcgtgcctgactgtgcgcagtggccggaccccacgctcgctcacacacccctcgccgctccgcgcctgactcgnncccgncagncgcgnntccgcgcccttggcaggcgtgggatccaggccggtagcgtgagccgagcgcagcctgccaggccgagtgggcccgagcaaaactcgggcaaaggcgccaccggccacagaggtttccggccggaaaagcgacaccccaaggatcccgtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 746 28.9 Weakly correlated
2 ZNF519 165 19.6 Weakly correlated
3 ZNF736 145 43.0 Weakly correlated
4 ZNF273 124 28.9 Weakly correlated
5 ZNF263 43 180.0 Weakly correlated
6 ZNF382 41 99.0 Weakly correlated
7 ZNF479 28 6.4 Weakly correlated
8 ZNF483 28 99.0 Weakly correlated
9 ZNF534 22 19.6 Weakly correlated
10 ZNF114 21 28.9 Weakly correlated
11 ZFP57 18 87.0 Weakly correlated
12 ZNF793 17 99.0 Weakly correlated
13 ZNF705B 13 28.9 Weakly correlated
14 ZNF560 12 43.0 Weakly correlated
15 ZNF202 10 160.0 Weakly correlated
16 ZNF506 10 28.9 Weakly correlated
17 ZNF616 10 43.0 Weakly correlated
18 ZNF75D 10 94.0 Weakly correlated
19 ZFP69B 9 99.0 Weakly correlated
20 ZNF274 9 99.0 Weakly correlated
21 ZNF28 9 28.9 Weakly correlated
22 ZNF2 9 99.0 Weakly correlated
23 ZNF18 8 160.0 Weakly correlated
24 ZNF394 8 99.0 Weakly correlated
25 ZNF585B 8 99.0 Weakly correlated
26 ZNF610 8 28.9 Weakly correlated
27 ZNF101 7 43.0 Weakly correlated
28 ZNF282 7 319.0 Weakly correlated
29 ZNF528 7 43.0 Weakly correlated
30 ZNF679 7 28.9 Weakly correlated
31 ZFP37 6 99.0 Weakly correlated
32 ZNF251 6 94.0 Weakly correlated
33 ZNF324 6 99.0 Weakly correlated
34 ZNF554 6 99.0 Weakly correlated
35 ZNF257 5 0.0 Weakly correlated
36 ZNF549 5 87.0 Weakly correlated
37 ZNF766 5 43.0 Weakly correlated
38 ZNF792 5 94.0 Weakly correlated
39 ZKSCAN1 4 160.0 Weakly correlated
40 ZNF468 4 28.9 Weakly correlated
41 ZNF486 4 8.6 Weakly correlated
42 ZNF547 4 74.0 Highly correlated
43 ZNF597 4 94.0 Weakly correlated
44 ZNF669 4 43.0 Weakly correlated
45 ZNF707 4 74.0 Highly correlated
46 ZNF723 4 15.2 Weakly correlated
47 ZNF786 4 99.0 Weakly correlated
48 ZNF816 4 28.9 Weakly correlated
49 ZNF141 3 43.0 Weakly correlated
50 ZNF317 3 99.0 Weakly correlated
51 ZNF485 3 94.0 Weakly correlated
52 ZNF705D 3 28.9 Weakly correlated
53 ZFP14 2 99.0 Weakly correlated
54 ZIM3 2 87.0 Weakly correlated
55 ZNF100 2 28.9 Weakly correlated
56 ZNF224 2 69.0 Moderately correlated
57 ZNF343 2 74.0 Highly correlated
58 ZNF44 2 43.0 Weakly correlated
59 ZNF490 2 43.0 Weakly correlated
60 ZNF559 2 74.0 Highly correlated
61 ZNF57 2 28.9 Weakly correlated
62 ZNF589 2 28.9 Weakly correlated
63 ZNF778 2 74.0 Highly correlated
64 ZNF84 2 99.0 Weakly correlated
65 ZNF93 2 8.6 Weakly correlated
66 PRDM9 1 0.0 Weakly correlated
67 ZNF133 1 99.0 Weakly correlated
68 ZNF175 1 94.0 Weakly correlated
69 ZNF177 1 94.0 Weakly correlated
70 ZNF182 1 99.0 Weakly correlated
71 ZNF197 1 99.0 Weakly correlated
72 ZNF234 1 99.0 Weakly correlated
73 ZNF264 1 99.0 Weakly correlated
74 ZNF334 1 99.0 Weakly correlated
75 ZNF417 1 28.9 Weakly correlated
76 ZNF418 1 43.0 Weakly correlated
77 ZNF429 1 28.9 Weakly correlated
78 ZNF441 1 43.0 Weakly correlated
79 ZNF460 1 74.0 Highly correlated
80 ZNF500 1 160.0 Weakly correlated
81 ZNF510 1 99.0 Weakly correlated
82 ZNF529 1 99.0 Weakly correlated
83 ZNF543 1 99.0 Weakly correlated
84 ZNF558 1 99.0 Weakly correlated
85 ZNF561 1 43.0 Weakly correlated
86 ZNF563 1 28.9 Weakly correlated
87 ZNF584 1 99.0 Weakly correlated
88 ZNF587B 1 8.6 Weakly correlated
89 ZNF587 1 28.9 Weakly correlated
90 ZNF605 1 99.0 Weakly correlated
91 ZNF66 1 0.0 Weakly correlated
92 ZNF671 1 94.0 Weakly correlated
93 ZNF674 1 99.0 Weakly correlated
94 ZNF701 1 28.9 Weakly correlated
95 ZNF75A 1 94.0 Weakly correlated
96 ZNF761 1 19.6 Weakly correlated
97 ZNF763 1 15.2 Weakly correlated
98 ZNF808 1 19.6 Weakly correlated
99 ZNF846 1 74.0 Highly correlated
100 ZNF891 1 99.0 Weakly correlated
101 ZNF8 1 99.0 Weakly correlated
102 ZNF91 1 6.0 Weakly correlated
103 ZNF92 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 156 28.9 Weakly correlated
2 ZNF736 131 43.0 Weakly correlated
3 ZNF273 115 28.9 Weakly correlated
4 ZNF519 70 19.6 Weakly correlated
5 ZNF263 19 180.0 Weakly correlated
6 ZNF793 10 99.0 Weakly correlated
7 ZNF479 9 6.4 Weakly correlated
8 ZNF534 8 19.6 Weakly correlated
9 ZNF483 6 99.0 Weakly correlated
10 ZNF28 6 28.9 Weakly correlated
11 ZNF75D 5 94.0 Weakly correlated
12 ZNF723 3 15.2 Weakly correlated
13 ZNF485 3 94.0 Weakly correlated
14 ZNF468 3 28.9 Weakly correlated
15 ZNF707 3 74.0 Highly correlated
16 ZNF549 3 87.0 Weakly correlated
17 ZNF282 2 319.0 Weakly correlated
18 ZNF506 2 28.9 Weakly correlated
19 ZNF490 2 43.0 Weakly correlated
20 ZNF257 2 0.0 Weakly correlated
21 ZFP14 2 99.0 Weakly correlated
22 ZFP57 2 87.0 Weakly correlated
23 ZFP69B 2 99.0 Weakly correlated
24 ZNF141 2 43.0 Weakly correlated
25 ZNF816 2 28.9 Weakly correlated
26 ZNF528 2 43.0 Weakly correlated
27 ZNF561 1 43.0 Weakly correlated
28 ZNF679 1 28.9 Weakly correlated
29 ZNF554 1 99.0 Weakly correlated
30 ZNF343 1 74.0 Highly correlated
31 ZNF182 1 99.0 Weakly correlated
32 ZNF560 1 43.0 Weakly correlated
33 ZNF18 1 160.0 Weakly correlated
34 ZNF761 1 19.6 Weakly correlated
35 ZNF846 1 74.0 Highly correlated
36 ZNF334 1 99.0 Weakly correlated
37 ZNF671 1 94.0 Weakly correlated
38 ZNF417 1 28.9 Weakly correlated
39 ZNF610 1 28.9 Weakly correlated
40 ZNF486 1 8.6 Weakly correlated
41 ZNF597 1 94.0 Weakly correlated
42 ZNF587 1 28.9 Weakly correlated
43 ZNF563 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF273 28.9 Weakly correlated
3 ZNF28 28.9 Weakly correlated
4 ZNF483 99.0 Weakly correlated
5 ZNF519 19.6 Weakly correlated
6 ZNF793 99.0 Weakly correlated