ZRdb KZFP & Repeats
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LTR_MER52A

  • Name
    MER52A
  • Repbase
    MER52A
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000856
Description :

MER52A is associated with MER52-int, and has 4 bp TSDs. The originallyreported orientation has been reversed. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatggcagcggcggcccgtctggagcggccgctgcnangacgccggctgcagcgggggaggcgcggccggggctgcgcgctccacggagccggcgggagccgggaacaggcgggagccccgcccccttccgagttggggcgggagcnncccgggtgcggctgcagccgcccanncgcggacccgggcntccccgtgctcntggggnccgggagcaggcaggagccccgccctcccgggcgcagctgcagccgcccagccgcggctgcggacccgggcatccctgcgctctcgggggcccgggaagncccccctgcccccgcaggcttggaagtgcctgctcccgccgcgnncgnccccgccccgnnnncgncgnncgnnccgcaggctcggaagtgcctgctcccgctgcctggcctctccccgctcccggcgcccgctccgatttcggagcaaagttgnggccgagcccgggcgctgtcgcgacccggccgggtgtgcgcgcgctcggggcggcgctgacacgccagccccctgccgcctcggccccctccggactttgggcgccgacgagcacgggagggaggccgagggggggctgagggcggctcggcgcgggcctgcaggcgcccctcggcacgaacagcctgggcgccatggacggcagcaggaggcagacaggctcctgggcggaaaggggcgggtccccggtgaagccccaccttcaagccagggacggcctgaagcctgggggccgggctgccagttccgggtggagtccgcggaccggagtgagaacttatggtgctttttccgggcccgcccatggccgcccatggaccaatcagcacgcacttcctcccctctgaagcccataaaaaccccggactcagccagactcgggcagacgtcgggacgaccagctgcggagaggagctacccactccgggntctcctctctgctgagagctgnanagncgtcgggacgacctgcctgcggagaggagctacccactccagggtctcctctctgctgagagctgaacactcgtcgggacgacctgcctgcggaaaggagctacccactncgggtctcctgngagctgttctgtcgctcaataaagctcctcttcgccttgctcaccctccanttgtccgcgtacctcattcttcctggacgcgggacaagaactcgggacccgccgaatggcggggctgaaagagctgtaacacaaacagggctgaaacacgccccctgctcgccacgttgcgggcgacgagaaggagagaagagctgcggcccttcggggagcccagacctaggagctccccgagccagggctgtgacaccctctttggggctctgcggttcctggcgtctccaagcttccgggcgccaccgcgttccccggtgcccgcngtggaagccgcttgcggtacgcctggtccagccgcagcctcgcagggagccggcgcccgtgccggcgcctggagctgcccgccccgccgcagccggcgtgcctggctgtgcgcagtggccggaccccgcgctcgctcgctcacacacccctcgccgctccgcgcctggctcgcccttggcaggcgtgggatccgggccggtagcgcgagccgagcgcagcctgccaggccgagtgggcggaacgagcccagcgggcccgagcaaaactcgggcaaaggcgccaccggccacagaggtttccggccggnaaagcgacaccccaaggatcccgtgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 2664 28.9 Weakly correlated
2 ZNF273 574 28.9 Weakly correlated
3 ZNF519 443 19.6 Weakly correlated
4 ZNF736 379 43.0 Weakly correlated
5 ZNF793 144 99.0 Weakly correlated
6 ZNF382 103 99.0 Weakly correlated
7 ZNF483 91 99.0 Weakly correlated
8 ZNF263 89 180.0 Weakly correlated
9 ZNF479 88 6.4 Weakly correlated
10 ZNF114 59 28.9 Weakly correlated
11 ZNF486 51 8.6 Weakly correlated
12 ZNF705B 41 28.9 Weakly correlated
13 ZNF534 39 19.6 Weakly correlated
14 ZNF28 33 28.9 Weakly correlated
15 ZNF560 33 43.0 Weakly correlated
16 ZNF679 28 28.9 Weakly correlated
17 ZNF18 26 160.0 Weakly correlated
18 ZNF506 23 28.9 Weakly correlated
19 ZNF616 21 43.0 Weakly correlated
20 ZNF549 20 87.0 Weakly correlated
21 ZNF723 20 15.2 Weakly correlated
22 ZFP57 19 87.0 Weakly correlated
23 ZNF274 19 99.0 Weakly correlated
24 ZNF547 17 74.0 Highly correlated
25 ZNF766 16 43.0 Weakly correlated
26 ZNF251 15 94.0 Weakly correlated
27 ZNF554 15 99.0 Weakly correlated
28 ZNF705D 14 28.9 Weakly correlated
29 ZNF320 13 28.9 Weakly correlated
30 ZNF701 13 28.9 Weakly correlated
31 ZNF528 11 43.0 Weakly correlated
32 ZNF610 11 28.9 Weakly correlated
33 ZFP37 10 99.0 Weakly correlated
34 ZIM3 10 87.0 Weakly correlated
35 ZKSCAN1 10 160.0 Weakly correlated
36 ZNF2 10 99.0 Weakly correlated
37 ZNF324 10 99.0 Weakly correlated
38 ZNF224 9 69.0 Moderately correlated
39 ZNF394 9 99.0 Weakly correlated
40 ZNF707 9 74.0 Highly correlated
41 ZNF490 8 43.0 Weakly correlated
42 ZNF510 8 99.0 Weakly correlated
43 ZNF57 8 28.9 Weakly correlated
44 ZNF589 8 28.9 Weakly correlated
45 ZFP69B 7 99.0 Weakly correlated
46 ZNF140 7 99.0 Weakly correlated
47 ZNF605 7 99.0 Weakly correlated
48 ZNF786 7 99.0 Weakly correlated
49 ZNF317 6 99.0 Weakly correlated
50 ZNF334 6 99.0 Weakly correlated
51 ZNF468 6 28.9 Weakly correlated
52 ZNF563 6 28.9 Weakly correlated
53 ZNF585B 6 99.0 Weakly correlated
54 ZNF735 6 28.9 Weakly correlated
55 ZNF778 6 74.0 Highly correlated
56 ZNF222 5 43.0 Weakly correlated
57 ZNF257 5 0.0 Weakly correlated
58 ZNF282 5 319.0 Weakly correlated
59 ZNF429 5 28.9 Weakly correlated
60 ZNF558 5 99.0 Weakly correlated
61 ZNF597 5 94.0 Weakly correlated
62 ZNF75D 5 94.0 Weakly correlated
63 ZNF101 4 43.0 Weakly correlated
64 ZNF177 4 94.0 Weakly correlated
65 ZNF197 4 99.0 Weakly correlated
66 ZNF234 4 99.0 Weakly correlated
67 ZNF44 4 43.0 Weakly correlated
68 ZNF674 4 99.0 Weakly correlated
69 ZNF763 4 15.2 Weakly correlated
70 ZNF765 4 8.6 Weakly correlated
71 ZNF780A 4 43.0 Weakly correlated
72 ZNF141 3 43.0 Weakly correlated
73 ZNF182 3 99.0 Weakly correlated
74 ZNF33A 3 99.0 Weakly correlated
75 ZNF500 3 160.0 Weakly correlated
76 ZNF675 3 8.6 Weakly correlated
77 ZNF730 3 19.6 Weakly correlated
78 ZNF789 3 99.0 Weakly correlated
79 ZNF91 3 6.0 Weakly correlated
80 ZNF133 2 99.0 Weakly correlated
81 ZNF17 2 69.0 Moderately correlated
82 ZNF248 2 99.0 Weakly correlated
83 ZNF264 2 99.0 Weakly correlated
84 ZNF337 2 43.0 Weakly correlated
85 ZNF41 2 99.0 Weakly correlated
86 ZNF420 2 94.0 Weakly correlated
87 ZNF586 2 43.0 Weakly correlated
88 ZNF66 2 0.0 Weakly correlated
89 ZNF747 2 43.0 Weakly correlated
90 ZNF845 2 28.9 Weakly correlated
91 ZNF878 2 43.0 Weakly correlated
92 ZFP14 1 99.0 Weakly correlated
93 ZKSCAN8 1 160.0 Weakly correlated
94 ZNF175 1 94.0 Weakly correlated
95 ZNF233 1 99.0 Weakly correlated
96 ZNF253 1 19.6 Weakly correlated
97 ZNF302 1 43.0 Weakly correlated
98 ZNF331 1 94.0 Weakly correlated
99 ZNF333 1 99.0 Weakly correlated
100 ZNF343 1 74.0 Highly correlated
101 ZNF347 1 43.0 Weakly correlated
102 ZNF441 1 43.0 Weakly correlated
103 ZNF480 1 43.0 Weakly correlated
104 ZNF485 1 94.0 Weakly correlated
105 ZNF514 1 94.0 Weakly correlated
106 ZNF559 1 74.0 Highly correlated
107 ZNF561 1 43.0 Weakly correlated
108 ZNF583 1 99.0 Weakly correlated
109 ZNF585A 1 99.0 Weakly correlated
110 ZNF611 1 19.6 Weakly correlated
111 ZNF624 1 99.0 Weakly correlated
112 ZNF649 1 28.9 Weakly correlated
113 ZNF669 1 43.0 Weakly correlated
114 ZNF682 1 28.9 Weakly correlated
115 ZNF684 1 99.0 Weakly correlated
116 ZNF699 1 99.0 Weakly correlated
117 ZNF705E 1 0.0 Weakly correlated
118 ZNF761 1 19.6 Weakly correlated
119 ZNF772 1 94.0 Weakly correlated
120 ZNF77 1 87.0 Weakly correlated
121 ZNF782 1 99.0 Weakly correlated
122 ZNF792 1 94.0 Weakly correlated
123 ZNF813 1 28.9 Weakly correlated
124 ZNF852 1 94.0 Weakly correlated
125 ZNF85 1 28.9 Weakly correlated
126 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 566 28.9 Weakly correlated
2 ZNF273 559 28.9 Weakly correlated
3 ZNF736 369 43.0 Weakly correlated
4 ZNF519 219 19.6 Weakly correlated
5 ZNF793 93 99.0 Weakly correlated
6 ZNF263 30 180.0 Weakly correlated
7 ZNF479 24 6.4 Weakly correlated
8 ZNF28 22 28.9 Weakly correlated
9 ZNF534 20 19.6 Weakly correlated
10 ZNF483 17 99.0 Weakly correlated
11 ZNF549 16 87.0 Weakly correlated
12 ZNF506 11 28.9 Weakly correlated
13 ZNF723 9 15.2 Weakly correlated
14 ZNF320 6 28.9 Weakly correlated
15 ZNF707 6 74.0 Highly correlated
16 ZNF490 6 43.0 Weakly correlated
17 ZNF18 4 160.0 Weakly correlated
18 ZNF679 4 28.9 Weakly correlated
19 ZNF468 4 28.9 Weakly correlated
20 ZNF282 3 319.0 Weakly correlated
21 ZNF2 3 99.0 Weakly correlated
22 ZNF382 3 99.0 Weakly correlated
23 ZNF429 3 28.9 Weakly correlated
24 ZNF563 3 28.9 Weakly correlated
25 ZNF786 3 99.0 Weakly correlated
26 ZNF141 3 43.0 Weakly correlated
27 ZIM3 3 87.0 Weakly correlated
28 ZFP57 3 87.0 Weakly correlated
29 ZNF789 2 99.0 Weakly correlated
30 ZNF257 2 0.0 Weakly correlated
31 ZNF324 2 99.0 Weakly correlated
32 ZNF597 2 94.0 Weakly correlated
33 ZNF610 2 28.9 Weakly correlated
34 ZNF75D 2 94.0 Weakly correlated
35 ZKSCAN1 2 160.0 Weakly correlated
36 ZNF560 2 43.0 Weakly correlated
37 ZNF486 2 8.6 Weakly correlated
38 ZNF778 2 74.0 Highly correlated
39 ZNF251 2 94.0 Weakly correlated
40 ZNF528 1 43.0 Weakly correlated
41 ZFP14 1 99.0 Weakly correlated
42 ZNF730 1 19.6 Weakly correlated
43 ZNF133 1 99.0 Weakly correlated
44 ZNF705D 1 28.9 Weakly correlated
45 ZNF705B 1 28.9 Weakly correlated
46 ZNF780A 1 43.0 Weakly correlated
47 ZNF586 1 43.0 Weakly correlated
48 ZNF337 1 43.0 Weakly correlated
49 ZNF182 1 99.0 Weakly correlated
50 ZNF561 1 43.0 Weakly correlated
51 ZNF394 1 99.0 Weakly correlated
52 ZNF585B 1 99.0 Weakly correlated
53 ZNF274 1 99.0 Weakly correlated
54 ZNF675 1 8.6 Weakly correlated
55 ZNF114 1 28.9 Weakly correlated
56 ZNF44 1 43.0 Weakly correlated
57 ZNF674 1 99.0 Weakly correlated
58 ZNF616 1 43.0 Weakly correlated
59 ZNF684 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF273 28.9 Weakly correlated
3 ZNF28 28.9 Weakly correlated
4 ZNF483 99.0 Weakly correlated
5 ZNF519 19.6 Weakly correlated