ZRdb KZFP & Repeats
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LTR_MER52-INT

  • Name
    MER52-INT
  • Repbase
    MER52AI
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000855
Description :

Associated with MER52A LTRs, forming an apparently autonomous ERV. Notethat MER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tttttgggggctcgtccgggatctgcggaagggtgagtaaaagcggacctgctgctttctgtccttttttcggagtccctaaactccacaatagccaaaatgaaagaaaaacaccgggcctctgtcagccagttaaaagcgactagcgcggctgccggacttaagacacggaggacaggcttgctggggaggacactgtcaatcccccatcaccctcgggtgttgggaatgttggctttgttccaatccagtttcccttcacggaggtctagccgtcgcgtgggaccggaaggaggtcctggggcaactgagggtatctggccgaggctacacctcggtgttatccgaaggcccctggactgactccagtccccgaccgcccgttagggtgtcggcactaggacctccagtctttcctatngcattttctttctttctttcgcggctgtcatggctcctatctcttctttatatacaatgttaaatgttaagggtgttgttgcaaaccacagagataatattactgggtagaatgagcatttggctcagtcatcagaagtgtaattcagaacaatgtggtttccgtctattcttagaagcaaggaggatgcaacgattgagagttttctttcccctgttgaaggaacccatttgcatagggcaagaggctttttcccccaggcaccttcccctcccctgcacttaagctgtttttttctcttttctccaccatgtcaggagttaacatagtcctgcgaatacagggagcttttctatgcgaggggttnttttttccttttgggaggcatcttattaggccaggtccccaattcccgggactccctttctctcccttgtttgaggaggacccggttccacagcttcactgcttatgatagggaagcaacggaggagcngccccgccggttgctggctgcaatttggcgagggccacctgggactaatttaatgggtccatgcaccctcctgaggcaccttttgtcccaagcttcggtttgaagccctagaaaggaaaactagatctgagggatccagaggcagacgacagcggaagtcnaggggcacagcgcaggtgagcatgactattcctgccgattaggccctcccgcttcatggatggaggtcatgctcgcatccatggcatagatgaggtctagggaacccaaaggttaccgacagcgggaggntagggcancgcgtaggtgagtgcgaatattcctacccnctaggcctccccgctncatgggtgaaggtcgcactngcacccatgggcggcacctgcnnaggtcgccgggactcggggatataaggncggaagaaagaaagggacgccttttttttctctccctcacgtaccccgggtattcgctggaaagagaaaggaanaaagggtgcctttttccccctctttccagatgggtaaccaaccatcttcagcctgcactcctctcgagtgcatcctgaatcactgggactcctttgaccctcagactctggagagagaaaaaaatgcctttttcctcctctgtcctctcttccagatgggtaaccaaccatcttcagcctgcactcctctggagtgcatcctgaatcactgggactgctttgaccctcagactctggagaaaaaacgcctcatantcctttgcacaaaggtttggccgaattatgatctgcaggaaggagaagcntggcctcaggaaggaagcattaatttcaataccatcctgcagctggaccttttctgtaaacgcgagggcaaatggtccgaggtcccatatgtgcaggctttctttgccttgcagggtaatccggacctttgccgacattgtaggattgatccagccctcctggtggccatctcaggagaggctgcaaggggcaatcccagggaactagggaagcaaaccccagaggtacctccagcgggggagtcagctccctccgctcctccctatccaggttctctctcaagcttgccccatcctagaaatcctcattttaggcaggtcccagtctcactcctgcccctacaacagatgcctggtgaatatggccccattaaggtccaggtccccttttctctacaggacttaaggcaaattaagggggatcttggcaagttttcagatgaccctgacaggtatatagaggctttccagaatttaacccaagtatttgaactctcctggaaggacgttatgttacttttgaatcaaaccctgactaccgctgagaagcaggccgccctgcaagcggcagagaantttggggatgagctttgtatctcatatagtgccagggaaggggacgagccttatccaattggaagaanagcagtaccattggaggaccctaaatgggaccccaatgatgaaatgggagaatggaagaggaaacactttcaggtgtgcatantggagggcttacgaaggactaggactaagcctctcaattacaccaagctatccatgatagaccagggattngatgagaatcccactgccttcctggaaaggctaagaggggccttggtaaagcacacctctctatctcctgattcagtcgagggacaactaatcctaaaggataagtttattactcaggcagcccctgatatcaggaggaagctgcagaaacaggccgtgggaccagatagtactttagagaacctcctgaaagtggccacctcggtcttttacaatagggatcgggaggaagcccaggagagagagaggagacacaagaaaaaggcagaggctctaatggccgccttgcaggctcacaaaccccagaatccccgagatgcacctgttaactgctacaaatgtggcaagccagggcactttaggaaggactgcccaggcagcatgaggaagccacctcgaccctgtccaatctgcgatggggaccactggagggcggactgtccccggagacgcgggtcaccgggtccagagccagtctcccaaatggtccagcaggactgatgggtcccggggctcctctccccggctccggtggtccagaccgccattaccatccaggagccccgggtgattctggaagtcgaagggaggaaggtggacctcctcctggacaccggagcgggcctttcagttctcctctccaatccgggcccccctcctctcttagcacgaccgtgaggggcgtctcaggaaagcctttaacccgatatttttcccaaccccttagttgtagttggggagacctcttgtttacccatgcctttctaatcatgcctgaaagcccaactcctctgttgggcagggatattctggcccatatggggaccaccatcctnatggccccaggacagactctttgtctccccctagtggagaccgatattaacccagaagtttgggcaactcaagggaaaattggccgagccacaaccgccataccggtccggatccaccttaaggatcccacctcctttcctaaccagagacaatatcccctgaaaccagaagttaggaaaggactagaagccatcattgataacttgaggatgcagggcctcctcaaaccctgcaacagcccttgtaataccccgatattgggggtacaaaaacccaacggggaatggagactggtccaggacctccgcctcgttaatgaggctgtggttccaattcacccggtggttcccaatccntataccctgctagctcaaatacctgagggaactaaatggttcacagtcctggacctaaaggatgcctttttctgcataccgttacaccccgactcccagtatttgtttgcattcgaggatccctccaaccagaccacccagctaacctggacggtgttacctcagggattccgagacagcccccacctgtttgggcaggcattgtcaaaagacctctctgagttcctttatcctcaggttaaagttttacaatacgtagatgacattctcctctgtgccccaactgaggaaatctctcaggagggcagtaaggctcttcttaattttctggctaacagaggatataaggtctcaaaatctaaggctcagctctgtcagacttcagtgaagtacctaggtctggtcttgtcagaggggaccagggcactgggcgaagaaaggattaagcccatctcctcctttcccctccccaaaaccctcaagcaactgaggggattcttgggcattacaggattctgcagactatggatacctgggtacggtgaaatagctcgtcccttatatcacctaataaaggagactcaggcagctaaaactcactccctaatttgggaaccagaggctaaaagggcctttgaccaactaaaacaagccttgcttgaggcaccagcccttagtcttcccatagggaagacgttcaatctttatgtgtcagaaaggaagggaatggccctgggagttctaacccaggcccgaggtccagcccagcagcctgtaggctacctaagtaaggagcttgatttggtagctaaaggatggccggcctgcctccgggcagttgcagcggtagccttgctggtaccagaggctactaagttaaccatggggaataacttaaccgtttataccccacataatgtggcaggactgctgtcttctaaggggagtctctggctaacggacaaccgcctcctcagatatcaagctctgctattagagggatctgcagtccaattaagaacctgtccctccctaaacccagccaccttcctcccagaggaagctggggagcttgaacatgactgcgaacagatagtagtgcaaacctatgcggccagagaggacctcaaggaaacccccttagagaacccagactggattctctttacggacggaagttcttttgtagaacaagggatccataaagcagggtatgcaatagttaccctgaatgacattgttgagagcgcgcctctctcctcgggcacaagtgctcaactagccgagctaattgccctcacgagggcgctcgaattaagcaaagggaaagcagttaacatttatactgattctaagtatgctttcctagtcctccatgcccatgccactatctggaaagagaggaacttcctcacagctaatgggtctcccattaaataccatcaggaaattaacagactattatcctcggttttcctcccacgggaagtggcagtaatacattgtaaaggccaccaaaaggggatggatgaaatagccgagggaaataggttggcagaccaagcagctaaatcagcagcgagagggccccagatttctgatccacttgaagcccctctgatctgggagggctccataagagaaataaaacctcaatattctcctgcggaaatagaatgggccacctctcggggatacacctttcagtcctcaggatggctacaatcggaggatggcaagcttcatctaccagctnccagccaatggaaagttcttaaaatccttcaccaggccttccacctaggtaaggataaaacctatcaattggcccagaggttgttctcaggtaaaaatctgntanaaacggtcaaacaggtcgttaatgcttgcgagacttgccttaaaaataatcccctcaatcgacggcttctcccccccggaacccaaagaacgggaggctacccgggggaagactggcagatggatttcacccatatgccaaagacaaggggcatccagtacctcctagtatgggtagataccttcactaactgggtagaagcatttccatgtcggacagagaaagcctctgaggtgataaaagtactaattaatgagataattcctcgctttggactccctaagtacctccagagcgataatggcccctcgttcaaggcggctgtcacccagggggtctcaaaggcactaggcatacaataccatcttcattgtgcttggagaccacaatcctcgggaaaggtagaaaagacaaatgatattatcaaaaggcacctcaggaaactgtctcaggagactcatctcccctggactacccttctccccatagccctactacgtgttagaaacaccccttcaaagctgggtttaagtcccttcgaaatgatgtatggacggccttttctcaccaatgatttcttgctagaccaagaaacctctgatttgattaaacatataacttctttggcccatttccaacaggaactgaaacaactgtcggaggcccaatcccgtgaactagggccacctctattcaacccaggggacctagtactggtaaaggcacttccttccctttctccctctntaggcccggattgggagggaccttacactgtacttctttctactcctacggcagtgaaggtcactggaatagattcttggattcattatactcgagtaaaggcctgggaagctgacggaattacctccgtcgacccagaagagcacccgaagtaccagtgtgaagaaatcggggacctcaagctaaaaatcacaaaagataagtgtcaataattaaccttccatggatatcctctttatagtcttgcctatgcttgctgttcttaccttcgttctgttcctcaccataaggcatctttgccaaggaccccttaatcctgaacgcccatgggattatctactcccctaaacagttatctctcttctaaagtttaactgcccccatacaagatttaatttctttcaccagggtgaaacagctctggccacaacattgttttcagaatgattagtntattttacttcttatttctgtnatctttggcactagattctttccttttagctcctctttgtataatacncatatttggtccatgcatacttaacctccttgtaaaatttgtttcttctcgcctagaggccatcaaactccaaacggtcatgcaactggagcctcggacgatggctccctttttaccggggacccttagataggcctctgagagagatctgactgccgttttccccaaaacaacgccccctgtcagcatgaagcagttaagagcggtcatcgtccctatcctaacggcagttagatgtacctcttcagaggggggat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 42 28.9 Weakly correlated
2 ZNF506 41 28.9 Weakly correlated
3 ZNF723 36 15.2 Weakly correlated
4 ZNF616 27 43.0 Weakly correlated
5 ZNF382 16 99.0 Highly correlated
6 ZNF479 14 6.4 Weakly correlated
7 ZNF766 13 43.0 Weakly correlated
8 ZNF534 11 19.6 Weakly correlated
9 ZNF263 11 180.0 Weakly correlated
10 ZNF718 10 19.6 Weakly correlated
11 ZNF324 9 99.0 Highly correlated
12 ZNF429 8 28.9 Weakly correlated
13 ZIM3 8 87.0 Moderately correlated
14 ZKSCAN1 8 160.0 Weakly correlated
15 ZNF486 7 8.6 Weakly correlated
16 ZNF320 7 28.9 Weakly correlated
17 ZNF793 7 99.0 Highly correlated
18 ZNF101 6 43.0 Weakly correlated
19 ZNF705D 6 28.9 Weakly correlated
20 ZNF554 6 99.0 Highly correlated
21 ZNF273 5 28.9 Weakly correlated
22 ZNF547 5 74.0 Weakly correlated
23 ZNF705B 5 28.9 Weakly correlated
24 ZFP69B 5 99.0 Highly correlated
25 ZNF394 5 99.0 Highly correlated
26 ZNF528 5 43.0 Weakly correlated
27 ZNF251 4 94.0 Moderately correlated
28 ZNF75D 4 94.0 Moderately correlated
29 ZNF610 4 28.9 Weakly correlated
30 ZNF18 4 160.0 Weakly correlated
31 ZNF558 4 99.0 Highly correlated
32 ZNF549 3 87.0 Moderately correlated
33 ZNF679 3 28.9 Weakly correlated
34 ZNF563 3 28.9 Weakly correlated
35 ZNF669 3 43.0 Weakly correlated
36 ZFP57 3 87.0 Moderately correlated
37 ZNF736 3 43.0 Weakly correlated
38 ZNF85 3 28.9 Weakly correlated
39 ZFP37 3 99.0 Highly correlated
40 ZNF28 3 28.9 Weakly correlated
41 ZNF2 3 99.0 Highly correlated
42 ZKSCAN8 2 160.0 Weakly correlated
43 ZNF169 2 94.0 Moderately correlated
44 ZNF677 2 99.0 Highly correlated
45 ZNF641 2 99.0 Highly correlated
46 ZNF519 2 19.6 Weakly correlated
47 ZNF175 2 94.0 Moderately correlated
48 ZNF792 2 94.0 Moderately correlated
49 ZNF589 2 28.9 Weakly correlated
50 ZNF585B 2 99.0 Highly correlated
51 ZNF584 2 99.0 Highly correlated
52 ZNF468 2 28.9 Weakly correlated
53 ZNF197 2 99.0 Highly correlated
54 ZNF780A 1 43.0 Weakly correlated
55 ZNF189 1 99.0 Highly correlated
56 ZNF735 1 28.9 Weakly correlated
57 ZNF778 1 74.0 Weakly correlated
58 ZNF264 1 99.0 Highly correlated
59 ZNF808 1 19.6 Weakly correlated
60 ZNF846 1 74.0 Weakly correlated
61 ZNF8 1 99.0 Highly correlated
62 ZNF202 1 160.0 Weakly correlated
63 ZNF224 1 69.0 Weakly correlated
64 ZNF257 1 0.0 Weakly correlated
65 ZNF701 1 28.9 Weakly correlated
66 ZNF284 1 43.0 Weakly correlated
67 ZNF41 1 99.0 Highly correlated
68 ZNF597 1 94.0 Moderately correlated
69 ZNF596 1 94.0 Moderately correlated
70 ZNF595 1 43.0 Weakly correlated
71 ZNF560 1 43.0 Weakly correlated
72 ZNF471 1 94.0 Moderately correlated
73 ZNF485 1 94.0 Moderately correlated
74 ZNF490 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF506 34 28.9 Weakly correlated
2 ZNF723 34 15.2 Weakly correlated
3 ZNF479 9 6.4 Weakly correlated
4 ZNF534 9 19.6 Weakly correlated
5 ZIM3 5 87.0 Moderately correlated
6 ZNF766 4 43.0 Weakly correlated
7 ZNF705D 4 28.9 Weakly correlated
8 ZNF320 4 28.9 Weakly correlated
9 ZNF705B 4 28.9 Weakly correlated
10 ZNF429 3 28.9 Weakly correlated
11 ZNF263 2 180.0 Weakly correlated
12 ZNF169 2 94.0 Moderately correlated
13 ZNF616 2 43.0 Weakly correlated
14 ZNF273 2 28.9 Weakly correlated
15 ZNF28 2 28.9 Weakly correlated
16 ZKSCAN1 2 160.0 Weakly correlated
17 ZNF793 2 99.0 Highly correlated
18 ZNF680 2 28.9 Weakly correlated
19 ZNF679 2 28.9 Weakly correlated
20 ZNF735 1 28.9 Weakly correlated
21 ZNF468 1 28.9 Weakly correlated
22 ZNF792 1 94.0 Moderately correlated
23 ZNF596 1 94.0 Moderately correlated
24 ZNF101 1 43.0 Weakly correlated
25 ZNF2 1 99.0 Highly correlated
26 ZNF549 1 87.0 Moderately correlated
27 ZNF846 1 74.0 Weakly correlated
28 ZNF528 1 43.0 Weakly correlated
29 ZNF324 1 99.0 Highly correlated
30 ZNF75D 1 94.0 Moderately correlated
31 ZNF597 1 94.0 Moderately correlated
32 ZNF718 1 19.6 Weakly correlated
33 ZNF251 1 94.0 Moderately correlated
34 ZFP57 1 87.0 Moderately correlated
35 ZNF202 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF479 6.4 Weakly correlated
2 ZNF506 28.9 Weakly correlated
3 ZNF534 19.6 Weakly correlated
4 ZNF723 15.2 Weakly correlated