ZRdb KZFP & Repeats
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LTR_MER51E

  • Name
    MER51E
  • Repbase
    MER51E
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000813
Description :

Note that MER stands for MEdium Reiteration frequency interspersedrepeat. As such, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggcaggagaatagggaattagggtaaccaagggttaaggcataagcaaaagaacagcaggtgcagccagttctaggcaagattaggcagcatacaggccacatcctcactcctgtgataacaagacagaagtttccacttcagcctctgattgaccgcgggccaagtctccacttcagcctctgattggtcgcgggccaatccttcatagggtgtaaccaattggaggcctctaaagggcacctaggggtgttaccnaaattcttttagcttaataaaaaccctaaagaacattgcaatcgnggggctcttgagccgcttgctcgagcccgctcccactctgtggagtgtactttcgcttcaataaatctgtgctttcgttactccgttcttttgttgctttgtctttcgttgcttcgttcttttgttgctttgtgcgttttgttcaattctttgttcaacgcgccaagaacctggaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF20 16 43.0 Highly correlated
2 ZNF394 13 99.0 Weakly correlated
3 ZNF766 13 43.0 Highly correlated
4 ZNF382 11 99.0 Weakly correlated
5 ZNF263 9 180.0 Weakly correlated
6 ZNF2 7 99.0 Weakly correlated
7 ZNF101 7 43.0 Highly correlated
8 ZNF197 6 99.0 Weakly correlated
9 ZNF350 6 99.0 Weakly correlated
10 ZNF680 6 28.9 Moderately correlated
11 ZNF584 6 99.0 Weakly correlated
12 ZNF175 6 94.0 Weakly correlated
13 ZFP69B 6 99.0 Weakly correlated
14 ZFP37 5 99.0 Weakly correlated
15 ZKSCAN8 5 160.0 Weakly correlated
16 ZNF324 5 99.0 Weakly correlated
17 ZNF589 5 28.9 Moderately correlated
18 ZKSCAN1 4 160.0 Weakly correlated
19 ZIM3 4 87.0 Weakly correlated
20 ZFP57 3 87.0 Weakly correlated
21 ZNF780A 3 43.0 Highly correlated
22 ZNF18 3 160.0 Weakly correlated
23 ZNF274 2 99.0 Weakly correlated
24 ZNF44 2 43.0 Highly correlated
25 ZNF705B 2 28.9 Moderately correlated
26 ZNF793 2 99.0 Weakly correlated
27 ZNF679 2 28.9 Moderately correlated
28 ZNF674 2 99.0 Weakly correlated
29 ZNF534 2 19.6 Weakly correlated
30 ZNF558 2 99.0 Weakly correlated
31 ZNF792 1 94.0 Weakly correlated
32 ZNF705D 1 28.9 Moderately correlated
33 ZNF671 1 94.0 Weakly correlated
34 ZNF808 1 19.6 Weakly correlated
35 ZNF610 1 28.9 Moderately correlated
36 ZNF605 1 99.0 Weakly correlated
37 ZNF597 1 94.0 Weakly correlated
38 ZNF585A 1 99.0 Weakly correlated
39 ZNF510 1 99.0 Weakly correlated
40 ZNF506 1 28.9 Moderately correlated
41 ZNF483 1 99.0 Weakly correlated
42 ZNF479 1 6.4 Weakly correlated
43 ZNF468 1 28.9 Moderately correlated
44 ZNF441 1 43.0 Highly correlated
45 ZNF347 1 43.0 Highly correlated
46 ZNF264 1 99.0 Weakly correlated
47 ZNF257 1 0.0 Weakly correlated
48 ZNF135 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF101 3 43.0 Highly correlated
2 ZIM3 3 87.0 Weakly correlated
3 ZNF263 3 180.0 Weakly correlated
4 ZNF584 2 99.0 Weakly correlated
5 ZNF766 2 43.0 Highly correlated
6 ZNF589 2 28.9 Moderately correlated
7 ZNF793 2 99.0 Weakly correlated
8 ZNF257 1 0.0 Weakly correlated
9 ZNF468 1 28.9 Moderately correlated
10 ZNF585A 1 99.0 Weakly correlated
11 ZNF680 1 28.9 Moderately correlated
12 ZNF175 1 94.0 Weakly correlated
13 ZNF780A 1 43.0 Highly correlated
14 ZNF382 1 99.0 Weakly correlated
15 ZNF350 1 99.0 Weakly correlated
16 ZNF44 1 43.0 Highly correlated
17 ZNF197 1 99.0 Weakly correlated
18 ZNF20 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats