ZRdb KZFP & Repeats
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LTR_MER51D

  • Name
    MER51D
  • Repbase
    MER51D
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000812
Description :

Shares similarity to MER51A/B/C towards the 3' end. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggcaggagaanntagcagagggaattggaagttggataaagggagaatgagtaaaagcangagagcagaagcaaggtgaaggggcgggtgagcaagaagcaagataagaagcagaagttgagcagccaaaacaaaagtgagatnnnaaagaagcgagcaaggagcccccatggccggcaagatccggaccaaaccagtaaggggcagctcctcagagatgggcatgcgcattagagagaaaaagtatccttaacatgaccccgtatgataatcagctcattaaagctcatgcatatggactgcatatcatgcatgtacttaaaattatgggatggaggcgacgcgcaagncgncgcaagcgcacaggggccannnnnnnaagtaactaagcaacccacctatcaatcaaaaggcagacgctggctagagattaggcagccttgggaagagaagaaaaaaaaaacacataaaaagacccaaagtacaccaaactgatgctgatctcatctcgcagaggtcagcccgctctcccctctccgagagtgtaatactgtgcttaataaacttttgctgctttgctatctgtgtgtgtctcgtccaattctttgttcgggacaccaagagcctggaactgcacggcaccatccggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 19 43.0 Highly correlated
2 ZNF382 13 99.0 Weakly correlated
3 ZNF589 10 28.9 Moderately correlated
4 ZNF197 10 99.0 Weakly correlated
5 ZKSCAN8 9 160.0 Weakly correlated
6 ZNF175 8 94.0 Weakly correlated
7 ZNF584 7 99.0 Weakly correlated
8 ZFP37 6 99.0 Weakly correlated
9 ZNF394 5 99.0 Weakly correlated
10 ZNF2 5 99.0 Weakly correlated
11 ZNF263 4 180.0 Weakly correlated
12 ZNF257 4 0.0 Weakly correlated
13 ZKSCAN1 4 160.0 Weakly correlated
14 ZNF18 3 160.0 Weakly correlated
15 ZNF610 3 28.9 Moderately correlated
16 ZFP69B 3 99.0 Weakly correlated
17 ZNF558 2 99.0 Weakly correlated
18 ZNF92 1 28.9 Moderately correlated
19 ZNF705D 1 28.9 Moderately correlated
20 ZNF701 1 28.9 Moderately correlated
21 ZNF695 1 28.9 Moderately correlated
22 ZNF793 1 99.0 Weakly correlated
23 ZNF84 1 99.0 Weakly correlated
24 ZNF597 1 94.0 Weakly correlated
25 ZNF585A 1 99.0 Weakly correlated
26 ZNF549 1 87.0 Weakly correlated
27 ZNF534 1 19.6 Weakly correlated
28 ZNF317 1 99.0 Weakly correlated
29 ZNF28 1 28.9 Moderately correlated
30 ZNF274 1 99.0 Weakly correlated
31 ZNF273 1 28.9 Moderately correlated
32 ZNF182 1 99.0 Weakly correlated
33 ZNF133 1 99.0 Weakly correlated
34 ZNF101 1 43.0 Highly correlated
35 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF257 2 0.0 Weakly correlated
2 ZIM3 1 87.0 Weakly correlated
3 ZNF101 1 43.0 Highly correlated
4 ZNF549 1 87.0 Weakly correlated
5 ZNF197 1 99.0 Weakly correlated
6 ZNF534 1 19.6 Weakly correlated
7 ZNF584 1 99.0 Weakly correlated
8 ZNF585A 1 99.0 Weakly correlated
9 ZNF589 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats