ZRdb KZFP & Repeats
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LTR_MER51C

  • Name
    MER51C
  • Repbase
    MER51C
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000811
Description :

75% identical to MER51A over the entire length; 80% similar to MER51B inthe 3' end region. There are apparent duplications within the first ~200bp from the 5' end. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tggaggcagggaacttaaggccaattcgtgctgacttcctaaaagggaaaacaccaaggctgggggcagggaatctaaggccaattcgtgctgacttcccaaagctggatcaaaaggaaaacacctgggtctgggggcagggaacctaaggccaattaacgcnaacttcctaaagctaaaccaaaaggaaaaanccccatctccccacgcccgagtaacaaaggatcaaaggctactctccctacaaccctcccccttccaccgcgtctcagatggaaagggagagtgcctcggattggccgcgggccaagcagggaccatcccttcatctgcatagggcgccaattcacctcagcctttaattagccacggaccaaatccttcatccagataaggggtagccgataggaacctcaaaaggagtacttaaancccagaaaactttgtaaccgggcccttgagccgcttgctcgggcccgctcccaccctgtggagtgctttctcgctttaataaatccctgctttcgctgcttcgttcctgtgtttcattcctttgttactttgtgcgttttgtccaattctttgttcaaaacgccaagaacctggacaactcgcagtcaaggccctccttccggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 7 43.0 Highly correlated
2 ZNF680 7 28.9 Moderately correlated
3 ZNF382 7 99.0 Weakly correlated
4 ZFP37 6 99.0 Weakly correlated
5 ZNF2 6 99.0 Weakly correlated
6 ZNF394 5 99.0 Weakly correlated
7 ZNF589 4 28.9 Moderately correlated
8 ZNF197 4 99.0 Weakly correlated
9 ZFP69B 4 99.0 Weakly correlated
10 ZKSCAN8 4 160.0 Weakly correlated
11 ZNF263 4 180.0 Weakly correlated
12 ZNF175 3 94.0 Weakly correlated
13 ZNF506 3 28.9 Moderately correlated
14 ZNF534 3 19.6 Weakly correlated
15 ZNF679 3 28.9 Moderately correlated
16 ZNF257 3 0.0 Weakly correlated
17 ZNF610 2 28.9 Moderately correlated
18 ZNF786 2 99.0 Weakly correlated
19 ZNF584 2 99.0 Weakly correlated
20 ZNF558 2 99.0 Weakly correlated
21 ZNF792 2 94.0 Weakly correlated
22 ZNF793 2 99.0 Weakly correlated
23 ZNF479 2 6.4 Weakly correlated
24 ZNF182 2 99.0 Weakly correlated
25 ZNF18 2 160.0 Weakly correlated
26 ZKSCAN1 2 160.0 Weakly correlated
27 ZNF324 2 99.0 Weakly correlated
28 ZNF28 1 28.9 Moderately correlated
29 ZNF101 1 43.0 Highly correlated
30 ZNF222 1 43.0 Highly correlated
31 ZNF765 1 8.6 Weakly correlated
32 ZNF730 1 19.6 Weakly correlated
33 ZIM3 1 87.0 Weakly correlated
34 ZNF264 1 99.0 Weakly correlated
35 ZNF441 1 43.0 Highly correlated
36 ZNF597 1 94.0 Weakly correlated
37 ZNF331 1 94.0 Weakly correlated
38 ZNF554 1 99.0 Weakly correlated
39 RBAK 1 99.0 Weakly correlated
40 ZNF425 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF197 2 99.0 Weakly correlated
2 ZNF534 2 19.6 Weakly correlated
3 ZFP69B 1 99.0 Weakly correlated
4 ZIM3 1 87.0 Weakly correlated
5 ZNF263 1 180.0 Weakly correlated
6 ZNF589 1 28.9 Moderately correlated
7 ZNF680 1 28.9 Moderately correlated
8 ZNF597 1 94.0 Weakly correlated
9 ZNF331 1 94.0 Weakly correlated
10 ZNF257 1 0.0 Weakly correlated
11 ZNF264 1 99.0 Weakly correlated
12 ZNF584 1 99.0 Weakly correlated
13 ZNF792 1 94.0 Weakly correlated
14 ZNF175 1 94.0 Weakly correlated
15 ZNF793 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats