ZRdb KZFP & Repeats
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LTR_MER51B

  • Name
    MER51B
  • Repbase
    MER51B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000810
Description :

MER51B LTR has 4 bp TSDs. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggcaggaaaatagggtctggaggcagggaacataaggccgattcacacttcagctatgacaggaaatatcctctccatttacatagggcgtacgccgagtaaatgactttgtaactttacttcatcctcttcatttacatagggcgtacnccaagtaaccaatggaancctctagagggtatttaaacccccgaaaattctgtaacggggcccttgagcccctatgctcgggcccgctcccacactgtggagtgtactttcattttcaataaatccctgcttttgttgcttcattccttccttgctttgtttgtgcgttttgtccaattctttgttcaagacgccaagaacctggacaccctccaccggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 28 99.0 Weakly correlated
2 ZNF18 18 160.0 Weakly correlated
3 ZNF766 12 43.0 Highly correlated
4 ZNF2 11 99.0 Weakly correlated
5 ZNF141 8 43.0 Highly correlated
6 ZNF394 7 99.0 Weakly correlated
7 ZNF584 7 99.0 Weakly correlated
8 ZNF263 6 180.0 Weakly correlated
9 ZFP37 5 99.0 Weakly correlated
10 ZNF317 5 99.0 Weakly correlated
11 ZNF589 5 28.9 Moderately correlated
12 ZNF257 5 0.0 Weakly correlated
13 ZNF197 5 99.0 Weakly correlated
14 ZNF175 5 94.0 Weakly correlated
15 ZFP69B 4 99.0 Weakly correlated
16 ZNF101 4 43.0 Highly correlated
17 ZNF701 4 28.9 Moderately correlated
18 ZKSCAN8 3 160.0 Weakly correlated
19 ZNF479 3 6.4 Weakly correlated
20 ZNF324 3 99.0 Weakly correlated
21 ZIM3 3 87.0 Weakly correlated
22 ZNF558 3 99.0 Weakly correlated
23 ZNF569 3 99.0 Weakly correlated
24 ZNF705B 3 28.9 Moderately correlated
25 ZNF140 3 99.0 Weakly correlated
26 ZNF20 3 43.0 Highly correlated
27 ZNF680 3 28.9 Moderately correlated
28 ZNF585B 2 99.0 Weakly correlated
29 ZNF610 2 28.9 Moderately correlated
30 ZNF679 2 28.9 Moderately correlated
31 ZNF486 2 8.6 Weakly correlated
32 ZNF823 2 43.0 Highly correlated
33 ZNF441 2 43.0 Highly correlated
34 ZNF320 2 28.9 Moderately correlated
35 ZNF28 2 28.9 Moderately correlated
36 ZNF705D 1 28.9 Moderately correlated
37 ZNF264 1 99.0 Weakly correlated
38 ZNF616 1 43.0 Highly correlated
39 ZNF674 1 99.0 Weakly correlated
40 ZNF675 1 8.6 Weakly correlated
41 ZNF251 1 94.0 Weakly correlated
42 ZNF202 1 160.0 Weakly correlated
43 ZNF182 1 99.0 Weakly correlated
44 ZNF135 1 94.0 Weakly correlated
45 ZNF273 1 28.9 Moderately correlated
46 ZKSCAN1 1 160.0 Weakly correlated
47 ZNF792 1 94.0 Weakly correlated
48 ZNF793 1 99.0 Weakly correlated
49 ZFP57 1 87.0 Weakly correlated
50 ZNF84 1 99.0 Weakly correlated
51 ZNF92 1 28.9 Moderately correlated
52 ZNF93 1 8.6 Weakly correlated
53 ZNF605 1 99.0 Weakly correlated
54 ZNF425 1 94.0 Weakly correlated
55 ZNF586 1 43.0 Highly correlated
56 ZNF282 1 319.0 Weakly correlated
57 ZNF284 1 43.0 Highly correlated
58 ZNF573 1 94.0 Weakly correlated
59 ZNF287 1 99.0 Weakly correlated
60 ZNF547 1 74.0 Weakly correlated
61 ZNF534 1 19.6 Weakly correlated
62 ZNF528 1 43.0 Highly correlated
63 ZNF506 1 28.9 Moderately correlated
64 ZNF490 1 43.0 Highly correlated
65 ZNF485 1 94.0 Weakly correlated
66 ZNF480 1 43.0 Highly correlated
67 ZNF334 1 99.0 Weakly correlated
68 ZFP14 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF18 8 160.0 Weakly correlated
2 ZNF257 5 0.0 Weakly correlated
3 ZIM3 3 87.0 Weakly correlated
4 ZNF141 3 43.0 Highly correlated
5 ZNF101 2 43.0 Highly correlated
6 ZNF479 2 6.4 Weakly correlated
7 ZNF701 2 28.9 Moderately correlated
8 ZNF263 1 180.0 Weakly correlated
9 ZNF674 1 99.0 Weakly correlated
10 ZNF680 1 28.9 Moderately correlated
11 ZNF766 1 43.0 Highly correlated
12 ZNF793 1 99.0 Weakly correlated
13 ZNF534 1 19.6 Weakly correlated
14 ZNF2 1 99.0 Weakly correlated
15 ZNF135 1 94.0 Weakly correlated
16 ZNF382 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF18 160.0 Weakly correlated