ZRdb KZFP & Repeats
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LTR_MER51A

  • Name
    MER51A
  • Repbase
    MER51A
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000809
Description :

MER51A has 4 bp TSDs. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggcaggagaatagggtctggaggcagggaacctaaggccgattcacgctgacttcctagaactaaatcgaaaggaaaaccccaactttccacgcccaagtaacaaaaggaccagaggctactccctttgcaaccccccaccttttctgcgtggcagatggaaaattgaaagtacctctgattggtcccctcccgcaaccaatcagactggtcgcgggccaagtcttcatttgcataggagtgtaactttgtaacttcacttcagcctctgattggtcgctttccgcaaccaatcagacgtttgcataggagtgtaactttgtaacttcacttcagcctctgattggtcgctttccgcaaccaatcagactgatcgcgggccactacttcatttacatagggtgtacaccaagtaaccaatgggaaacctctagagggtatttaaaccccagaaaattctgtaaccgggcccttgagccgcttgctcgggcccgctcccaccctgtggagtgtactttcgttttcaataaatctctgctttcgttgcttcattctttccttgctttgtttgtgcgttttgtccaattctttgttcaaaacgccaagaacctggacaccctccaccggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 91 43.0 Highly correlated
2 ZNF382 59 99.0 Weakly correlated
3 ZNF680 52 28.9 Moderately correlated
4 ZNF20 43 43.0 Highly correlated
5 ZNF589 37 28.9 Moderately correlated
6 ZNF175 25 94.0 Weakly correlated
7 ZNF394 21 99.0 Weakly correlated
8 ZFP37 13 99.0 Weakly correlated
9 ZNF506 13 28.9 Moderately correlated
10 ZNF584 12 99.0 Weakly correlated
11 ZKSCAN8 10 160.0 Weakly correlated
12 ZNF350 9 99.0 Weakly correlated
13 ZNF2 9 99.0 Weakly correlated
14 ZNF263 9 180.0 Weakly correlated
15 ZNF197 9 99.0 Weakly correlated
16 ZNF786 8 99.0 Weakly correlated
17 ZNF18 8 160.0 Weakly correlated
18 ZNF468 7 28.9 Moderately correlated
19 ZNF479 7 6.4 Weakly correlated
20 ZNF257 7 0.0 Weakly correlated
21 ZFP69B 7 99.0 Weakly correlated
22 ZIM3 6 87.0 Weakly correlated
23 ZNF317 6 99.0 Weakly correlated
24 ZKSCAN1 6 160.0 Weakly correlated
25 ZNF701 5 28.9 Moderately correlated
26 ZNF610 5 28.9 Moderately correlated
27 ZNF324 5 99.0 Weakly correlated
28 ZNF141 5 43.0 Highly correlated
29 ZNF793 5 99.0 Weakly correlated
30 ZNF140 5 99.0 Weakly correlated
31 ZNF558 4 99.0 Weakly correlated
32 ZNF534 4 19.6 Weakly correlated
33 ZNF528 4 43.0 Highly correlated
34 ZNF736 4 43.0 Highly correlated
35 ZNF669 4 43.0 Highly correlated
36 ZFP57 4 87.0 Weakly correlated
37 ZNF101 4 43.0 Highly correlated
38 ZNF251 4 94.0 Weakly correlated
39 ZNF554 3 99.0 Weakly correlated
40 ZNF695 3 28.9 Moderately correlated
41 ZNF169 3 94.0 Weakly correlated
42 ZNF597 3 94.0 Weakly correlated
43 ZNF182 3 99.0 Weakly correlated
44 ZNF705B 3 28.9 Moderately correlated
45 ZNF705D 3 28.9 Moderately correlated
46 ZNF549 3 87.0 Weakly correlated
47 ZNF274 3 99.0 Weakly correlated
48 ZNF735 3 28.9 Moderately correlated
49 ZNF808 3 19.6 Weakly correlated
50 ZNF490 3 43.0 Highly correlated
51 ZNF334 3 99.0 Weakly correlated
52 ZNF682 2 28.9 Moderately correlated
53 ZNF273 2 28.9 Moderately correlated
54 ZNF563 2 28.9 Moderately correlated
55 ZNF12 2 99.0 Weakly correlated
56 ZNF75D 2 94.0 Weakly correlated
57 ZNF679 2 28.9 Moderately correlated
58 ZNF616 2 43.0 Highly correlated
59 ZNF707 1 74.0 Weakly correlated
60 ZNF684 1 99.0 Weakly correlated
61 ZNF92 1 28.9 Moderately correlated
62 ZNF84 1 99.0 Weakly correlated
63 ZNF765 1 8.6 Weakly correlated
64 ZNF723 1 15.2 Weakly correlated
65 ZNF792 1 94.0 Weakly correlated
66 RBAK 1 99.0 Weakly correlated
67 ZNF486 1 8.6 Weakly correlated
68 ZNF133 1 99.0 Weakly correlated
69 ZNF230 1 28.9 Moderately correlated
70 ZNF28 1 28.9 Moderately correlated
71 ZNF37A 1 99.0 Weakly correlated
72 ZKSCAN5 1 160.0 Weakly correlated
73 ZNF429 1 28.9 Moderately correlated
74 ZNF441 1 43.0 Highly correlated
75 ZNF445 1 99.0 Weakly correlated
76 ZNF484 1 99.0 Weakly correlated
77 ZNF677 1 99.0 Weakly correlated
78 ZNF519 1 19.6 Weakly correlated
79 ZNF548 1 94.0 Weakly correlated
80 ZNF568 1 99.0 Weakly correlated
81 ZNF573 1 94.0 Weakly correlated
82 ZNF585A 1 99.0 Weakly correlated
83 ZNF585B 1 99.0 Weakly correlated
84 ZNF641 1 99.0 Weakly correlated
85 ZNF674 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 28 43.0 Highly correlated
2 ZNF680 18 28.9 Moderately correlated
3 ZNF257 7 0.0 Weakly correlated
4 ZNF468 6 28.9 Moderately correlated
5 ZNF101 4 43.0 Highly correlated
6 ZNF506 3 28.9 Moderately correlated
7 ZNF695 2 28.9 Moderately correlated
8 ZKSCAN8 2 160.0 Weakly correlated
9 ZNF141 2 43.0 Highly correlated
10 ZNF350 2 99.0 Weakly correlated
11 ZNF534 2 19.6 Weakly correlated
12 ZNF563 2 28.9 Moderately correlated
13 ZFP57 2 87.0 Weakly correlated
14 ZNF528 1 43.0 Highly correlated
15 ZNF597 1 94.0 Weakly correlated
16 ZNF793 1 99.0 Weakly correlated
17 ZNF20 1 43.0 Highly correlated
18 ZNF707 1 74.0 Weakly correlated
19 ZNF484 1 99.0 Weakly correlated
20 ZNF735 1 28.9 Moderately correlated
21 ZNF585A 1 99.0 Weakly correlated
22 ZNF674 1 99.0 Weakly correlated
23 ZNF18 1 160.0 Weakly correlated
24 ZNF684 1 99.0 Weakly correlated
25 ZNF140 1 99.0 Weakly correlated
26 ZKSCAN5 1 160.0 Weakly correlated
27 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF468 28.9 Moderately correlated
3 ZNF680 28.9 Moderately correlated