ZRdb KZFP & Repeats
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LTR_MER51-INT

  • Name
    MER51-INT
  • Repbase
    MER51I
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000816
Description :

The MER51-int ERV retrotransposon is flanked by MER51(A-E) LTRs. Notethat MER stands for MEdium Reiteration frequency interspersed repeat. Assuch, MERs as a group are a grab bag of DNA transposons andretrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tattttggcgagccagccaggaggaagaggtaagcccaaagtttgggatttatttttctccttttcctttctgctccatacaggggaatctctctctctcttttcctttccaactcgggacccttggtgggcagcgcctaaacacggaagcaactgcaggtttctggccgtggccagtgaaactaaggggtttccatgtggagaagcctgaccgccaccgcccggttcgcttaagggacctgggtctttttcnttttttttttcctctctttctttttcagtctttcagcggctgtttcctagtagctccttggaaattgagggcaattggctggggtcactccccggtactgcctgaaggcctaggaatgaatgggaataattgccctgccccgaagggggaaggactcttttntttttttatcttttccgnncgtggtccctgatccctacgtgcggcgcagctcggagcaaactcgcacgtgtttcaggcgacttaaaccttcttttcttatgctaaattcttcccttnccctactcaactggctaaggacnaaagaagcccacccggcctccagttcctatcattacagttcatggctattcctagtggaacgggaagcatgggaaagcgtggccttatcaaattataaggatgctaaaagtcggggattacacccaggnaccaaaggaaagctcatagtaggctctggagggaaaacatgcaaagtggcaccggtgcccacctaaggtcagagacgtctgacactctaagattggaccccacagggggacgccccgggggatcctncggacctcaacctctccaaaggggacgcccttggcagaggttctgaggtctagtactaagccctccttagaattttctctcgcagttgcaatgctgtttggccccaanattgtttggaatctggagtttactgtcgaatgggaaagtgggatggcgttgcatgtatccaggcttttgtgctgctgttctaagcagggggcctggttaacgtgtgacgccctcctttggtgctgtttggccccagtgctctttggagtctggggaggtttggcctttaaaaatcaaactgccatggagactgctttacccgaaattttggttcacagccttcattggattatctattggggcaaagtaaaaccggcgagcttgtattgctatctcatggctaaggttccaangctattggatcttcgtttatgtgtgtgtatacatgtctagatgtgtttatttgtatgtacacttattgttatatgttgtgtctaccanaattggcttataagtaaaagagcgctcataaattaagtaaataagtctaagcaattttcaagttcacgtgactntaagtataactttactaaacaagcggctttanaaattattggtggaataaaaatagaaatgccttcagaattgtcagcatacattttgntctgaattttatgtttgtctttgctagatattttgagatgtcagngtttggcatagaaggttataaaactataaacccagccaaaacaaaatgatcttggtttgcgtgccnnnntttttttttgacaaatgagagtaatttaatgttagctaaatcttctgagttattggcaaaaatacctatgtatttaactttgaggctcttacttaggtttaggtgagcacctgatgttcactggctattaaaaacgtggttaacaaggaaataactaactttaaatgatagtgtctaatatctcagtttacagaagtaatctagataaactgtttaaaagtgaaaaattgagtacangtgaatgggataaatgttttaggtaaactttttgtgtaaattaaaatcttaaagttatttttgatgctcatttaatatctgggtcatttccaattaagaaagggttgtgatatggggaaatatgtttctaaanattgtggaattgttcttatctataaatgcccatatctgatagttcaggatttcttgctttttagggtttcactaaagttttaggttactaaggataaaattctagttaacacgtaattctgtatacaaaatgtgccagaaagggttatgttattagtgagaaaaagaataattttgtctaattcagaagttatctaaaagttagttcaaattacagatttgaaaaggttatttatgaaacaatgtagtaaggaaccattaagtaggggagaaagatgtggaaaaagtttaaataataaaatattctttaaaacctgatagagaattggagacatttggctaattaacattttcatagttaaagctcttagtcttgattaataaaataagaagtattgtaaagaaatgcatcggcagtttggcaattctttttttnaaatatagttaagcatgaagctggatttagtgtggagccaaatttcacatacatgcttgcattgcttcacactatgtttactgttttgcgtggatagtgctggcactggagtacttattggtcatgtgcctaaagtgaatttcttgattgcacaggatgtatgatgatattggtgaacttaaggatattgaattgtgtatcaggaataaaatattcattatgtgggttttttcggggggccctgggtaacactgtagcctccagggtaaattgagtaggaaaatttagggttggtttcctgtttatttgtttttgcttctagttttcattcgtttgctgtttattnctcctctggctttgcttgtgtatgatcgcatatatataaaaccatngatttttttnnnncgttttttagtttctagtggaaggcttttatttggttctgtgaatagttattttgtttcctatgcnnnnnnatttctagcaagtcatcattcgttccatttatctggaattcctaagctacctttgtcgggcccgcaggaattaatggagcacaccagcttttntatcctnnnntaaactaactttttggattttaggcttcctgatactttaagtgtgttgagtatactctcgtaaatagaatttgagtcgatatttctctctctctgcctaatttctccaaaatttgtaaactatttgtgaatattcttaattcatggcaatgtgtttgtttgcatacacggtcaagcagggtcgctagggccgctcagggagagagaacccagaaacctggcatgccggcaaaagggtaagaatttcttaccagtcagnctctggcctctctctctctnnnnttctctctgtgcaaactggttaaatgaatggtaaaagtcactgtttatctcctctgtaaagttttagattaatgggaaaaagaattctgaggctagtcttaagctgtagtgaatctggtgtgctttgtgtgtctttctgtattgttctgtcataaagaggggtaccttaggatagaacgcgggcctaggaccccgtaagcccgctgttcaagacggcccagcaaactggtcagtcatgtccttgggagcttgaccttgtaaccacgtggccgtgctttctntnncttttcacaatggcggccgggttcagggttcaattcccggcttagggaatgagtcctttatcttctgtctgtgtatttatatgtgttgtgtaatataaaagagctttaattaattggtnnnttaanaataataagagcttaaatcaaatattttgtcagaaaagtaaaaagtgtaatgccttttannnagttcatgtgacttaagtaatctttgggaaataaagacagttttaaagattattggtaaaataaaaatatcttcaaaaatgtaaacatttggtctaaattatgcaggtcagatattaggtttgctaaantgctttaaggtcataaactgcttctttgacttttgaaaattgttcaatttactttggagcattagattctagataaggcctggggacatgtggaattagccatgccccctagctatgcaaagaaggttataaagaaaagagattttatataagaaaggatcttgtatggtaaattcttgtcctaaagtaaaatgactggttgtttaaaaggagggatgtttaggacaagtcagaaagtccaagcatgtcgtagatggtctgtgtaagtcgtgaaagaatttatgaaagggaatttatgcaagaaatgttgtacaatttaaaggtgattaggcctcctaaatgcttcataaaatgccactatgactctcgcgnntaactgtacaacttgcctgctttacagctaggtaaggcctgncgggacacgtggagtagccacgncncnnnnnnnnnctanctacggatgctggaaagagtcagaccttatctgcacttctgtctgggtcctaggctccacacctagtacataattaaannatcctaaacttaccaaggttttcaccaaaagtaaaagtcgctaagagttaacantgtaacatgtanttgagactactgaagaaacagttttacatgcaaggtgtgtaaagcgcgnaaagtgaaatnnnnnncggtgtttttggtaaaagattataagaaggcatgggaatgtggatttttttnttnngcctaaagggttaaaggattgttttaagttagaataaagctaaaggtttaagcaagttgtggaaggtttgtaaaaaattaatcttgtaaaagattctgtgtgtgaacatattggctaaagttaaaggggtattattcagtttttccgtaaattgaacattggaataaaagcacaancaggnttttcttagagcactgatctgctctttaacaaaaatttgtaaagggttataaaaggtttatgagaatcttaccttatggtcaaactgattaagattggatagatttgtctataaggttttattaagaattgggtttgacattaatagtacactaatgcaagggtgaaatttggctttctctcttgaacaagattttcatgtaatattaaaagataatgaaaantttttgtttgccttttgaataaactaccaaaaaaaaaggaagggaaagacaaaagacagattgtttggaaagctaagtcttccctctatcaatgagtaaaggtttttgccttttnaaaaannttttttgagtcantcattttggctaaatgaatgacttatggtaacctggaattctatttcataatatcaagtgttttaaacctttaacatatttgatnaggcttcccaaaatcaaatttcagcttcaaaatngtcttttctgacctctaacttntgaggatgctacagagggcccctgnngaancatccaaaagagaggtaaanagaattatttgacatgttaagttacatgggaagcattgtcaaaaannntaaaaatttagtcttcttcgggttatattttagtgaatgannnntatatatatgttccaaaattgtatgggatttctaaaattctaatatgtctgagtatatgctatcaatcataattatggttattatgttaagttattgtanaccacagaaataaccaaatttccttgtcaatngtgtttttaactatgactatttaaagtnanttccacagtnaattgtttaatgctaatgcagtttctgaaancgtnacaagcanacaaaatcctagaatatggtgtcttttaggaagttnattaaaggatggaaagaactctnaaaagcactcttgaatacgggttcctgagaacntnagantcatgtcatttaaactgggnaagaattcttggaacttnnntgaaaagnttgnctgggttataaaactgctaacccaggatagaancaaaagattaattaaataccaagaaaatactttgtcagattttcatgntaanccgnccgttgctaaaatngtttaaatanacaatncgactgggttccatgntcnaactcnngggaacnatgataanncatcggttaacagtnntattcgcctgntttggtgaaacgnttggtatncaaggttntataaagtcaacgttnattaagcatgttttctggttgnataaaagctttcnccttgaagngggcngatgntnnaacagtngattattatgctacagtgtattttcaccaggtaaagaaagnaagctttttatggtttgaatcttctgggaacatcagagaaagactgtccttgccatccacactacaacaaaacttcgggaccttgaactttgggttcatagtctcgcaactgagaagggtccctccacgctcttggaactgtgcacccattggaacccttaaggtaaaactaaccagggaaatttctcccaacggaagaagatggcatccttgatgtgaacagcttttcccaagttcacagattaagacttctactatcatgaaactcttatctttgaatattttttcttgcttatgcctctatgaacaatagaagtggaaaaggggtctgttatgtgcacttatggggtatacttttatttgtgaaggagtttgcagccagccttatacatggataaccttatactttgatagataaaagatgaaggcccaatgtaggtaagaaactttaatggtacatacgttgcctcataatcagtcaaaaacaaaacattggttcactcctcttaacccacantcatgggttaaagagaacattgccaggaggccttcactcttctannnnngaagggcatcatttgttaggtcctttttccatncgnncgggtttaaagtaaaagaagcaatgattagaaatgtatccctcatgataggctctatagcaaattctactgtaaaggctacagttacacaacagactttaaattctcttgtgaaagttatgctaaanaatagaattggctaaacagagaagtatctgtgcagctgctggcacttgtggcctatggagaaatacatcaaatgaagattatagaaattcagtggtaggggattnnnaacgaagagactgcttagttaagtgagtagactctttatctagctcattctttgatctatttgattttaggaggtttggtttatggggaccttgggtaaggagcatactccaaactcttggtattatcctcccaatagtcataataatagtctccctggtgcgctgtattctctcaaaggttttaaatgcttgcatgcagccatctctagaatgtcanatggtctctcttcaactggaatgacaagagctgaaagaaatgtgcgaccatgaggacaccgtaacctatgaatgacgtgctgagaccggaaacccaaaatgatggtaactgagagtggcgctaaggccctaagttttggtcacactctcacctaagtgagaacctgaccaaaaagggggaattttttaaaacaaaattntgggaggccattgttttggactgagctcatgcactaggccccaacagaccaaaccaaanccaaaatggagtcgctcgtgctaagactttaaggaaacacatacggatcctagaacagaccaggttttgttttttctcctgcaaatctctataacaaacattcctgacagcataggtatccaccccctgaagttcccattaaatcttttaaccaaattcatttcctctcgcctagagaccatcaagcttcagatgatcatgcaacaaaggttccagccagttccaggtgaagacaccacccctggccatcaaggagctaccctgcctccactagacagagcagggcgagagttccgtgatccccaataggtagggactacgccccaagccagcatgaagcagttacagaaaaaagaccatcggtccctctgcctcccataaagatttatggggatcacatctctccggggggaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 41 8.6 Weakly correlated
2 ZNF382 23 99.0 Weakly correlated
3 ZNF43 21 43.0 Highly correlated
4 ZNF479 14 6.4 Weakly correlated
5 ZNF394 10 99.0 Weakly correlated
6 ZNF534 9 19.6 Weakly correlated
7 ZNF490 8 43.0 Highly correlated
8 ZFP37 7 99.0 Weakly correlated
9 ZNF558 7 99.0 Weakly correlated
10 ZNF680 6 28.9 Moderately correlated
11 ZNF75D 6 94.0 Weakly correlated
12 ZNF141 6 43.0 Highly correlated
13 ZNF101 5 43.0 Highly correlated
14 ZIM3 5 87.0 Weakly correlated
15 ZNF610 5 28.9 Moderately correlated
16 ZNF766 4 43.0 Highly correlated
17 ZNF793 4 99.0 Weakly correlated
18 ZNF506 3 28.9 Moderately correlated
19 ZNF547 3 74.0 Weakly correlated
20 ZNF554 3 99.0 Weakly correlated
21 ZNF562 3 28.9 Moderately correlated
22 ZNF2 3 99.0 Weakly correlated
23 ZNF264 3 99.0 Weakly correlated
24 ZNF324 3 99.0 Weakly correlated
25 ZNF585A 2 99.0 Weakly correlated
26 ZNF595 2 43.0 Highly correlated
27 ZNF597 2 94.0 Weakly correlated
28 ZNF429 2 28.9 Moderately correlated
29 ZNF133 2 99.0 Weakly correlated
30 ZNF251 2 94.0 Weakly correlated
31 ZNF202 2 160.0 Weakly correlated
32 ZNF18 2 160.0 Weakly correlated
33 ZNF792 2 94.0 Weakly correlated
34 ZNF549 2 87.0 Weakly correlated
35 ZNF765 1 8.6 Weakly correlated
36 ZNF8 1 99.0 Weakly correlated
37 ZNF816 1 28.9 Moderately correlated
38 ZNF707 1 74.0 Weakly correlated
39 ZNF705B 1 28.9 Moderately correlated
40 ZNF701 1 28.9 Moderately correlated
41 ZNF92 1 28.9 Moderately correlated
42 ZNF573 1 94.0 Weakly correlated
43 ZNF417 1 28.9 Moderately correlated
44 ZNF354C 1 99.0 Weakly correlated
45 ZNF317 1 99.0 Weakly correlated
46 ZNF284 1 43.0 Highly correlated
47 ZNF273 1 28.9 Moderately correlated
48 ZNF26 1 99.0 Weakly correlated
49 ZNF257 1 0.0 Weakly correlated
50 ZNF248 1 99.0 Weakly correlated
51 ZNF197 1 99.0 Weakly correlated
52 ZNF182 1 99.0 Weakly correlated
53 ZNF175 1 94.0 Weakly correlated
54 ZNF140 1 99.0 Weakly correlated
55 ZKSCAN1 1 160.0 Weakly correlated
56 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF43 19 43.0 Highly correlated
2 ZNF479 8 6.4 Weakly correlated
3 ZNF534 5 19.6 Weakly correlated
4 ZNF101 4 43.0 Highly correlated
5 ZIM3 4 87.0 Weakly correlated
6 ZNF141 3 43.0 Highly correlated
7 ZNF75D 3 94.0 Weakly correlated
8 ZNF680 2 28.9 Moderately correlated
9 ZNF595 2 43.0 Highly correlated
10 ZNF585A 2 99.0 Weakly correlated
11 ZNF766 2 43.0 Highly correlated
12 ZNF133 2 99.0 Weakly correlated
13 ZNF317 1 99.0 Weakly correlated
14 ZNF202 1 160.0 Weakly correlated
15 ZNF558 1 99.0 Weakly correlated
16 ZNF264 1 99.0 Weakly correlated
17 ZNF394 1 99.0 Weakly correlated
18 ZNF140 1 99.0 Weakly correlated
19 ZNF417 1 28.9 Moderately correlated
20 ZNF506 1 28.9 Moderately correlated
21 ZNF175 1 94.0 Weakly correlated
22 ZNF573 1 94.0 Weakly correlated
23 ZNF597 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF43 43.0 Highly correlated