ZRdb KZFP & Repeats
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LTR_MER50

  • Name
    MER50
  • Repbase
    MER50
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000807
Description :

MER50 has 4 bp TSDs. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttacagtaggtagctagtcagacatgagcagggcaggagagggccccccccacacacaccaggaatgtcaggcgaccatcaggtgatggtcaggcggttgttaaactgtctctctaaaataataattggtcgcagccggcgccagggaaaggcagtctcccaatagatagaaaacacctgaaactggtgatcagcagcttcccgataagatctcaggagttgggcgagtgggctcaagcatgcgcactaagaggcaaaatggcggagtttaactggtatatgaccttcctctaggaacactcgactggtaagggaagaacgcctcaagtgagcatgcgtacaactccagtaaacacactgcgcatgcggcccctcccaagtgctggcaggccactgcgcatgcggacagcccaccccaagggaaaatcaggggagaagggacgcaaaccccggaagcatgccaacgtataaaaccccaagtcaaaggtcaaaccgcgcacttgatctctcaagtcgcccgcttggccctcttccaagtgtactttacttcctttcgttcctgctctaaagctttttaataaactttcactcctgctctaaaacttgcctcggtctctccctctgccttatgcccctcggtcgaattctttcttctgaggaggcaagaattgaggttgctgcagacccgtacggattcgccgccggtaactcagataccttccaccgntaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF607 251 43.0 Highly correlated
2 ZNF382 147 99.0 Weakly correlated
3 ZNF766 120 43.0 Highly correlated
4 ZNF680 66 28.9 Moderately correlated
5 ZNF793 62 99.0 Weakly correlated
6 ZNF263 60 180.0 Weakly correlated
7 ZFP57 56 87.0 Weakly correlated
8 ZNF479 55 6.4 Weakly correlated
9 ZNF589 55 28.9 Moderately correlated
10 ZNF251 48 94.0 Weakly correlated
11 ZNF224 44 69.0 Weakly correlated
12 ZNF175 42 94.0 Weakly correlated
13 ZNF534 39 19.6 Weakly correlated
14 ZKSCAN1 37 160.0 Weakly correlated
15 ZFP37 34 99.0 Weakly correlated
16 ZKSCAN8 34 160.0 Weakly correlated
17 ZNF197 33 99.0 Weakly correlated
18 ZNF2 33 99.0 Weakly correlated
19 ZNF394 33 99.0 Weakly correlated
20 ZNF554 31 99.0 Weakly correlated
21 ZNF584 31 99.0 Weakly correlated
22 ZNF18 27 160.0 Weakly correlated
23 ZNF324 25 99.0 Weakly correlated
24 ZNF528 22 43.0 Highly correlated
25 ZNF317 21 99.0 Weakly correlated
26 ZNF549 21 87.0 Weakly correlated
27 ZNF610 21 28.9 Moderately correlated
28 ZNF679 20 28.9 Moderately correlated
29 ZFP69B 18 99.0 Weakly correlated
30 ZNF257 18 0.0 Weakly correlated
31 ZNF558 18 99.0 Weakly correlated
32 ZIM3 17 87.0 Weakly correlated
33 ZNF701 17 28.9 Moderately correlated
34 ZNF101 16 43.0 Highly correlated
35 ZNF75D 16 94.0 Weakly correlated
36 ZNF792 14 94.0 Weakly correlated
37 ZNF141 13 43.0 Highly correlated
38 ZNF490 13 43.0 Highly correlated
39 ZNF274 12 99.0 Weakly correlated
40 ZNF486 12 8.6 Weakly correlated
41 ZNF320 11 28.9 Moderately correlated
42 ZNF547 11 74.0 Weakly correlated
43 ZNF705B 11 28.9 Moderately correlated
44 ZNF723 11 15.2 Weakly correlated
45 ZNF182 10 99.0 Weakly correlated
46 ZNF468 9 28.9 Moderately correlated
47 ZNF707 9 74.0 Weakly correlated
48 ZNF114 8 28.9 Moderately correlated
49 ZNF626 8 0.0 Weakly correlated
50 ZNF641 8 99.0 Weakly correlated
51 ZNF483 7 99.0 Weakly correlated
52 ZNF585B 7 99.0 Weakly correlated
53 ZNF778 7 74.0 Weakly correlated
54 ZNF8 7 99.0 Weakly correlated
55 ZNF133 6 99.0 Weakly correlated
56 ZNF140 6 99.0 Weakly correlated
57 ZNF28 6 28.9 Moderately correlated
58 ZNF563 6 28.9 Moderately correlated
59 ZNF682 6 28.9 Moderately correlated
60 ZNF705D 6 28.9 Moderately correlated
61 ZNF92 6 28.9 Moderately correlated
62 ZKSCAN5 5 160.0 Weakly correlated
63 ZNF282 5 319.0 Weakly correlated
64 ZNF418 5 43.0 Highly correlated
65 ZNF429 5 28.9 Moderately correlated
66 ZNF441 5 43.0 Highly correlated
67 ZNF519 5 19.6 Weakly correlated
68 ZNF616 5 43.0 Highly correlated
69 ZNF124 4 43.0 Highly correlated
70 ZNF202 4 160.0 Weakly correlated
71 ZNF230 4 28.9 Moderately correlated
72 ZNF26 4 99.0 Weakly correlated
73 ZNF273 4 28.9 Moderately correlated
74 ZNF287 4 99.0 Weakly correlated
75 ZNF337 4 43.0 Highly correlated
76 ZNF350 4 99.0 Weakly correlated
77 ZNF419 4 28.9 Moderately correlated
78 ZNF560 4 43.0 Highly correlated
79 ZNF573 4 94.0 Weakly correlated
80 ZNF57 4 28.9 Moderately correlated
81 ZNF585A 4 99.0 Weakly correlated
82 ZNF605 4 99.0 Weakly correlated
83 ZNF611 4 19.6 Weakly correlated
84 ZNF816 4 28.9 Moderately correlated
85 ZNF823 4 43.0 Highly correlated
86 ZNF100 3 28.9 Moderately correlated
87 ZNF12 3 99.0 Weakly correlated
88 ZNF136 3 74.0 Weakly correlated
89 ZNF157 3 99.0 Weakly correlated
90 ZNF169 3 94.0 Weakly correlated
91 ZNF211 3 94.0 Weakly correlated
92 ZNF225 3 74.0 Weakly correlated
93 ZNF302 3 43.0 Highly correlated
94 ZNF334 3 99.0 Weakly correlated
95 ZNF33A 3 99.0 Weakly correlated
96 ZNF425 3 94.0 Weakly correlated
97 ZNF432 3 99.0 Weakly correlated
98 ZNF445 3 99.0 Weakly correlated
99 ZNF506 3 28.9 Moderately correlated
100 ZNF530 3 28.9 Moderately correlated
101 ZNF582 3 99.0 Weakly correlated
102 ZNF684 3 99.0 Weakly correlated
103 ZNF695 3 28.9 Moderately correlated
104 ZNF749 3 28.9 Moderately correlated
105 ZNF765 3 8.6 Weakly correlated
106 ZNF786 3 99.0 Weakly correlated
107 ZNF791 3 87.0 Weakly correlated
108 ZNF84 3 99.0 Weakly correlated
109 RBAK 2 99.0 Weakly correlated
110 ZFP14 2 99.0 Weakly correlated
111 ZFP69 2 99.0 Weakly correlated
112 ZKSCAN2 2 180.0 Weakly correlated
113 ZKSCAN3 2 99.0 Weakly correlated
114 ZNF160 2 74.0 Weakly correlated
115 ZNF17 2 69.0 Weakly correlated
116 ZNF180 2 99.0 Weakly correlated
117 ZNF254 2 43.0 Highly correlated
118 ZNF264 2 99.0 Weakly correlated
119 ZNF283 2 99.0 Weakly correlated
120 ZNF331 2 94.0 Weakly correlated
121 ZNF343 2 74.0 Weakly correlated
122 ZNF347 2 43.0 Highly correlated
123 ZNF34 2 99.0 Weakly correlated
124 ZNF354A 2 99.0 Weakly correlated
125 ZNF354C 2 99.0 Weakly correlated
126 ZNF430 2 19.6 Weakly correlated
127 ZNF439 2 8.6 Weakly correlated
128 ZNF44 2 43.0 Highly correlated
129 ZNF454 2 99.0 Weakly correlated
130 ZNF45 2 99.0 Weakly correlated
131 ZNF480 2 43.0 Highly correlated
132 ZNF484 2 99.0 Weakly correlated
133 ZNF550 2 94.0 Weakly correlated
134 ZNF555 2 94.0 Weakly correlated
135 ZNF561 2 43.0 Highly correlated
136 ZNF597 2 94.0 Weakly correlated
137 ZNF627 2 74.0 Weakly correlated
138 ZNF649 2 28.9 Moderately correlated
139 ZNF700 2 28.9 Moderately correlated
140 ZNF780A 2 43.0 Highly correlated
141 ZNF789 2 99.0 Weakly correlated
142 ZNF81 2 99.0 Weakly correlated
143 ZNF846 2 74.0 Weakly correlated
144 ZNF85 2 28.9 Moderately correlated
145 ZNF879 2 99.0 Weakly correlated
146 ZFP1 1 99.0 Weakly correlated
147 ZFP28 1 99.0 Weakly correlated
148 ZFP90 1 99.0 Weakly correlated
149 ZIM2 1 0.0 Weakly correlated
150 ZNF135 1 94.0 Weakly correlated
151 ZNF181 1 94.0 Weakly correlated
152 ZNF184 1 99.0 Weakly correlated
153 ZNF212 1 160.0 Weakly correlated
154 ZNF222 1 43.0 Highly correlated
155 ZNF223 1 43.0 Highly correlated
156 ZNF248 1 99.0 Weakly correlated
157 ZNF267 1 43.0 Highly correlated
158 ZNF284 1 43.0 Highly correlated
159 ZNF286A 1 160.0 Weakly correlated
160 ZNF304 1 99.0 Weakly correlated
161 ZNF30 1 94.0 Weakly correlated
162 ZNF311 1 99.0 Weakly correlated
163 ZNF333 1 99.0 Weakly correlated
164 ZNF33B 1 99.0 Weakly correlated
165 ZNF354B 1 99.0 Weakly correlated
166 ZNF37A 1 99.0 Weakly correlated
167 ZNF383 1 99.0 Weakly correlated
168 ZNF417 1 28.9 Moderately correlated
169 ZNF41 1 99.0 Weakly correlated
170 ZNF431 1 28.9 Moderately correlated
171 ZNF43 1 43.0 Highly correlated
172 ZNF440 1 28.9 Moderately correlated
173 ZNF442 1 43.0 Highly correlated
174 ZNF460 1 74.0 Weakly correlated
175 ZNF471 1 94.0 Weakly correlated
176 ZNF485 1 94.0 Weakly correlated
177 ZNF500 1 160.0 Weakly correlated
178 ZNF510 1 99.0 Weakly correlated
179 ZNF529 1 99.0 Weakly correlated
180 ZNF540 1 87.0 Weakly correlated
181 ZNF543 1 99.0 Weakly correlated
182 ZNF548 1 94.0 Weakly correlated
183 ZNF557 1 15.2 Weakly correlated
184 ZNF562 1 28.9 Moderately correlated
185 ZNF567 1 99.0 Weakly correlated
186 ZNF571 1 99.0 Weakly correlated
187 ZNF578 1 15.2 Weakly correlated
188 ZNF586 1 43.0 Highly correlated
189 ZNF587 1 28.9 Moderately correlated
190 ZNF596 1 94.0 Weakly correlated
191 ZNF674 1 99.0 Weakly correlated
192 ZNF675 1 8.6 Weakly correlated
193 ZNF69 1 28.9 Moderately correlated
194 ZNF716 1 19.6 Weakly correlated
195 ZNF718 1 19.6 Weakly correlated
196 ZNF730 1 19.6 Weakly correlated
197 ZNF735 1 28.9 Moderately correlated
198 ZNF74 1 99.0 Weakly correlated
199 ZNF75A 1 94.0 Weakly correlated
200 ZNF782 1 99.0 Weakly correlated
201 ZNF785 1 94.0 Weakly correlated
202 ZNF799 1 43.0 Highly correlated
203 ZNF7 1 99.0 Weakly correlated
204 ZNF813 1 28.9 Moderately correlated
205 ZNF852 1 94.0 Weakly correlated
206 ZNF860 1 0.0 Weakly correlated
207 ZNF878 1 43.0 Highly correlated
208 ZNF880 1 28.9 Moderately correlated
209 ZNF90 1 8.6 Weakly correlated
210 ZNF91 1 6.0 Weakly correlated
211 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF607 246 43.0 Highly correlated
2 ZNF479 40 6.4 Weakly correlated
3 ZNF793 32 99.0 Weakly correlated
4 ZNF534 26 19.6 Weakly correlated
5 ZFP57 20 87.0 Weakly correlated
6 ZNF251 13 94.0 Weakly correlated
7 ZNF257 11 0.0 Weakly correlated
8 ZNF680 10 28.9 Moderately correlated
9 ZNF549 10 87.0 Weakly correlated
10 ZNF468 8 28.9 Moderately correlated
11 ZNF589 7 28.9 Moderately correlated
12 ZNF197 7 99.0 Weakly correlated
13 ZNF263 7 180.0 Weakly correlated
14 ZNF141 7 43.0 Highly correlated
15 ZIM3 7 87.0 Weakly correlated
16 ZNF75D 6 94.0 Weakly correlated
17 ZNF584 5 99.0 Weakly correlated
18 ZNF723 5 15.2 Weakly correlated
19 ZNF382 5 99.0 Weakly correlated
20 ZNF766 4 43.0 Highly correlated
21 ZNF324 4 99.0 Weakly correlated
22 ZNF101 4 43.0 Highly correlated
23 ZNF626 4 0.0 Weakly correlated
24 ZNF684 3 99.0 Weakly correlated
25 ZNF320 3 28.9 Moderately correlated
26 ZNF610 3 28.9 Moderately correlated
27 ZNF528 3 43.0 Highly correlated
28 ZNF701 3 28.9 Moderately correlated
29 ZKSCAN5 3 160.0 Weakly correlated
30 ZNF175 3 94.0 Weakly correlated
31 ZNF554 2 99.0 Weakly correlated
32 ZNF429 2 28.9 Moderately correlated
33 ZNF317 2 99.0 Weakly correlated
34 ZNF558 2 99.0 Weakly correlated
35 ZNF679 2 28.9 Moderately correlated
36 ZNF483 2 99.0 Weakly correlated
37 ZNF224 2 69.0 Weakly correlated
38 ZNF18 2 160.0 Weakly correlated
39 ZNF160 1 74.0 Weakly correlated
40 ZNF561 1 43.0 Highly correlated
41 ZNF490 1 43.0 Highly correlated
42 ZNF331 1 94.0 Weakly correlated
43 ZNF587 1 28.9 Moderately correlated
44 ZNF34 1 99.0 Weakly correlated
45 ZNF417 1 28.9 Moderately correlated
46 ZNF230 1 28.9 Moderately correlated
47 ZKSCAN8 1 160.0 Weakly correlated
48 ZNF585A 1 99.0 Weakly correlated
49 ZKSCAN1 1 160.0 Weakly correlated
50 ZNF749 1 28.9 Moderately correlated
51 ZNF792 1 94.0 Weakly correlated
52 ZNF846 1 74.0 Weakly correlated
53 ZNF182 1 99.0 Weakly correlated
54 ZNF273 1 28.9 Moderately correlated
55 ZNF430 1 19.6 Weakly correlated
56 ZNF334 1 99.0 Weakly correlated
57 ZNF530 1 28.9 Moderately correlated
58 ZNF789 1 99.0 Weakly correlated
59 ZNF212 1 160.0 Weakly correlated
60 ZNF347 1 43.0 Highly correlated
61 ZNF418 1 43.0 Highly correlated
62 ZNF573 1 94.0 Weakly correlated
63 ZNF605 1 99.0 Weakly correlated
64 ZFP14 1 99.0 Weakly correlated
65 ZNF140 1 99.0 Weakly correlated
66 ZNF28 1 28.9 Moderately correlated
67 ZNF2 1 99.0 Weakly correlated
68 ZNF33B 1 99.0 Weakly correlated
69 ZNF283 1 99.0 Weakly correlated
70 ZNF44 1 43.0 Highly correlated
71 ZNF519 1 19.6 Weakly correlated
72 ZNF543 1 99.0 Weakly correlated
73 ZNF765 1 8.6 Weakly correlated
74 ZNF582 1 99.0 Weakly correlated
75 ZNF611 1 19.6 Weakly correlated
76 ZNF287 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF251 94.0 Weakly correlated
3 ZNF257 0.0 Weakly correlated
4 ZNF468 28.9 Moderately correlated
5 ZNF479 6.4 Weakly correlated
6 ZNF607 43.0 Highly correlated
7 ZNF680 28.9 Moderately correlated
8 ZNF793 99.0 Weakly correlated