ZRdb KZFP & Repeats
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LTR_MER50-INT

  • Name
    MER50-INT
  • Repbase
    MER50I
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000815
Description :

MER50-int is closely related to MER4-int group ERVs, and is flanked byMER50-type LTRs. Note that MER stands for MEdium Reiteration frequencyinterspersed repeat. As such, MERs as a group are a grab bag of DNAtransposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tactttggtgccgcgtgactcggatacgttccctagtggtaaganacctctacgcctcgccttcttcggctggaggcgttcaacccccgtacgcggttttcttctcccctttcgctctcctgcttactaaccaacccccagaacgattcctctcggccacagtggctctgctccccccggctgatctctcagctcaccctgacgggtggctcgcgggggtgggaaggaccttggggtccgcaccgagtaganctgaggcactaatggccctcctggacaggaggctcgcgagagtggtagggctaaagcctaaaaccgtgcaatgtctggggtttcctctgctttttcaactaaaatcggctctttcccaaaaacccgcaccgcctattctcctgttttctctgtgtgtgttctgaaatggccttgcgcacccgccggaccgtccgcctcgggggcaagtctgccttttctctgctttcacttcgcatgccacgtgacttcttaaacacacactccctgttattcgtgcgcccgcggctcttgctgcgtttgcgcggcagcaaagacacgggctcccttgcggatatcccctgagatttatacttgtttttaccctaccagctcggatgacctccaacccttcccctgtctgctggcncattgccgggacagacactaattggaaccccggctctgccagctccttatgacttaccatatgcttttcgttcctgttacgccccagggccaagttttccggtggcttttgaagcagtttgtccgcctgcatagggcctcactctgtggccctttaaggaccccacctacttgctttttttgagttagcacccctttgggaggaggggaaattcttcctttgccatttgcgagttcttaccccaagccccaagtcctccggaggttactnctttatgtcaagagggcaaataaacgttgccctctcgaatccaagggctgctgtttttgcgagcatatgaaggctttccatgagtattcctctcgcttcctcccacttcctcctgtagcagagggattgtcctgtctgtttaagcatttgttctgcatgttaccccgggaggacgaggaaccccaaatacaaattttcctccatttctctaatcacttccacgcccttctcaatatgcatcaagaccttcaaggtcatattcgaagggagggaagtccagcccccttgcggcagttagctgaaaaacaggcttctcgtctacttaaagaacatgggaaatgggaatctgagaaaagagataatcattttgttgctagaatgctccgagcgagagtcactataaggtcatggagacaaggatataggccggcccaaggccgcaggcgcaagagacccataggacagagatgaaggctggtcccaggctaacagattaccattagaacagagatgaaggcaggttaggggtacacggtaagaccggttcattccggaaccccaaggatgaacagggggcccctgttcactccggtatctcctctgttctcaagtgggtaattgtgacgagatgggaccaaggttaagggtacacggtaagaccggttcattccggaaccctaaggacgaatgggggatgccccgttcagganannataataggaaagtaagaggggacgccttctttttctttttcctcctctgttctctcttcgcagatgggtaatcgcgtctccataccacaggacacgcccctcggatgcatccccaaaaanctgggaaaagtttgatcccccaaaccttaaaacaaaaaaggctagttttcctttgtaatactgtttggcctaaaaacgaactncgggagcaggaatcttggccggaaaatggaacataaattttaattttaatacgatctatcaactagatttgttttgccgccagcagggaaaatggacagaaatcccctatgtacaggccctaagaaacaaccctgacctttgtcgggcttgtaaaatggatccagcgatgatagcagccatagtcaggcagccccctccggttggttcgggagacccctattgggtttacccagggctcaagccccggaggaaccaagggcggagcttagctcaaaccccccttctaccccattatatccaagtctcccagccctggagccttcccctccctacccagggccatcctctggacaccacccccttaagttatgccccttcaagaggttagtggacccactagagtccagactccattcactatgcaagacctgagccaaattaaaatggaactagggaagtttatggaggaccctgacaaatacatcaaagggttccgtaaactgggcttaacatttgaactcacctggagggacctctcagtcatactagggcaaactctgtctaagggagaacgtgactccattacggaggcggcccaacaatttgcaaacgcaatgcacatgactgaccctggtggctaccctgtgggggccaccgcagttccccaggtcgaccccaattgggattacaatacccaggggggtatatgggcaaggaaccacatgttcctctgtctggtagaaggaatgaaagctagcagaacaaagcctgtgaactataataaattggccttaatagatcaaggccctcttgaaaaccccaccgctttcctagagaggctacaagaggccctagtgaaacatactaacctagacccagagacaccagaagggcaactggtcctaaaggaccgtttcctaactcaggcagccccagatattcggaggaaactncaaaagccagcnctggancccagcgcccctatgcngganatcctcaaantagcttcctcggtcttttacaaccgagaccagganaaggagganagggctcaggaaaaggagaggcgaaaggaaaagcggcagctccaactattggctgctctacaagcccgccagccccctccaggttgccctcagaacaccctcccaggtaactgccatcggtgcgggaagccaggccactggaaggcaaactgccccaatgggacaaatgggaaaaagccccgcacggcttgcccctctgccacaagctcggccactggaaacgggactgccctgagggccgaagggcccccgggacagaatcccaacccctgatggccttgagctgaaggggccctccgctccggccggctcccggatcggacatcgctatcgangggacagagccaagggcngctttggaggcggcaagtaagactataagtttccttttgggcaagagctgcctactctgtgctaatctcttctctgggcaactntcctccaaatcctgccgggtaatgggggcaaatggcaccccctccctccaaaagaaaagattcacacccctttggggcaaaaatatactttccaagatgggtgcccaacctctgaattcatctttctaatagccctatttctcctgggaaagctacctaaatctttaaccaataacttcaactggacagtcctacctcaggggtttagaaatagcccacacttattcggacaagccctagcnaaaaatctaaccgagcaatctcttgaggggggataacttctacagtatgtagataacctccttatctgctcccccttcacaggactcgcacagcaacatgcagtacaaaccntaacttcctaacagaaggaaaatgacttttgtctaattcaaaggttataaaggtaaagaggtatttttggtaaggaaggttataaagaaaagagattttatatgagaaaggatcttgtatggtaaattcttgtcctaaagtaaaatgactggttgtttaaaaagagggatgtttaggacaagtcagaaagtccaagcatgtcgtagatggtctgtgtaagtcgtgaaaagannnnnnnttcgtgaaagggaatttataaagaaatgttgtacaattttaaaggttattaggcctactaaatgcttcataaactgctactatgactcttaactgtacaacttgcctgctttaaagctaggtaaggcctggggacatacggagttagccatgccccctagctatgctggaaagagtcagaccttatctgcacttctgtctggtgtcctaggctccanacctagtacataattagaatcgcttacttaccaggttttcaccaaaagtaaaagttgctaagagttaacagtgtaacatgtacttgagactactggaaaaaacagttttacatgcaaggcgtgtaaggaaagtagaatgtgcttttggtaaaagattataagaaggcatgggaatgtggatttttttggcctagtttagagggttaaaggattgttttaagttagataggataaagctgaaggtttgagcaagttgtggaaggtttgtgaaaaattaatcttgtaaaagaaattctgtgtgaacatattggctaaagttaaaggggtattattcagtttntccgtaaattgaacattggaataaaagcacaacanggttttcttagagcattgttctgctctttaacagaaaanttgtaaagggttataaaaggtttatgagaatcttaccttatgnngtcaaactgattaagattggatagatttgtctataaggttttattaagaattgggtttgacatcaatagtacactaatgcaaaggtaaaatttggctttctttgggctgtatttgtataaatgtgttattggtatgtgttccaaaattatgcgaaactcctataattctgatatgacttagtatacgttatcagtaataattataattgttatgttaaattattgtgtgccacagaggntaacaaatttccttgtcaattgtgtctttgactgtggctgccctaagactttttgtcatccacagacaattgttgtcttgttttgatcctctttaaaaggtggttttataatcagctataggactctaacaggtgctcttaaatgcaggtttctgataactttggagattgtgacattagaatagaggaaaaaacctttcaggactctcatggagagctgaaatgttcatgaatatcaagcagaacaggagttaactgcatggactgaactaatagaagactgaaataatccttttatgactttttgcttaaaacgttgctgatcctttgtttttcaaagccaagaaaacttttcttttgagctatttacagcttttaacaattgagtannnncccgcgaagtatactcctataaacaaaatttggagcatatttgtttctctctacctgatttctccagnaatttggaaactatttgtgagtattcttaacttatggcaatatagttatttgcataagtgcaataagaatctgttttcttttgcaacaggacacaattggagaaactggttattttaccaaggctttgactggaatggcgtgctttcctttaaggaatcaaatttgacttatagagccaataaaagccccttgggaaaactggcctcataccttgtctacacagtccctgtacagggttcctgacctgtggtaagtaaagaatgtcactttctgacaggcccaggagccccaagttatcttgggacctcaagaggagaggaatttacccaactcatacggtatttgatggcacaaacccatggctgggcttaaggctttaaaaagtcttatctgagattccttatggaacgaagttccatcaaagccaatttaaaaaggagcctatatggcaaataattattcttgctgtgctttatgcaaataatcaggccaagtataataagactaaagcttattttgcaaancaaatcagtcctatcatgatttgtttttaataaaaatgaggactggagaggaaaaattatgtttcaagaactatggtacacctgttattagattctagtctcatcagttgtttttgagtttttgtctgcaatttagactaaccctgcttattcctgtgaaccaaccagtgatctctggctgcagctcagaagaaacaagagggatgggtaatgtaaaaatctggatcaatattctaattctgggcacatattggaatcggctagcaaccccatgcacccaagtcttagcaggcatgactatagccaccagctacctgggcgtgtcggcagcctcgggatttttggagctgtcctcacccccttatttcgttttgacatctctncttgtcttaaaacccaaggagccttctatatttgtggccaatcagttcaccaatgcctccccactaactggactggaacttgtaccataggctatgtatccccggacatcttcatagcccctggcaatctctctcttccagtaccaatctacgggcattccatcttgcccagggtgaggagggctatccaattaattccccttctcgcgggactcggcattatagccggtacgggaaccggaattgctggaatcacaaaagcctccttgacctatagccaactctcaaaggaaatagccaacaacattgatgccatggctaaaaccttaacaaccgtgcaagaacaaatcgactctttagcagccgtagtcctccaaaatcgtcgaggactagatatgttaacggcagcacagggaggaatttgtttagccttagatgaaaaatgttgcttttgggtaaatcaatcgggaaaagtacaagacaacatcagacaactcctaaatcgagcctccagtttacgggaacaagcctctcagggttggttaaattgggaaggaacctggaaatggttctcctgggttcttccctttttaggcccacttgttagtctcctacttttgctccttttggtccatgtcttctaaatctaataacccgatttgtctcctctcgccttcaggccatcaagctccagatgatcctcagtgagggataccgtcctctcaatattcaagagtcacccttctacaggggacccctagactgcccatcagtgggacacgacagaggcgaaatcctgcccctgtctcccttggacctggctggataccgctttcaccaacccacggagccaccctgccctgacagctagcaagaggccaagacccacagaacaaccaccaccgcccctctgtcagcaggaagcagttacagaagactgaccttcgtccattttccccaaagaattggggtcttggactcttgaggggggaaatgttacag
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 40 99.0 Weakly correlated
2 ZNF723 28 15.2 Weakly correlated
3 ZNF224 27 69.0 Weakly correlated
4 ZNF680 23 28.9 Moderately correlated
5 ZNF486 21 8.6 Weakly correlated
6 ZNF793 20 99.0 Weakly correlated
7 ZNF766 16 43.0 Highly correlated
8 ZNF324 15 99.0 Weakly correlated
9 ZNF479 14 6.4 Weakly correlated
10 ZFP37 11 99.0 Weakly correlated
11 ZNF43 11 43.0 Highly correlated
12 ZNF547 11 74.0 Weakly correlated
13 ZNF263 9 180.0 Weakly correlated
14 ZNF2 9 99.0 Weakly correlated
15 ZNF101 8 43.0 Highly correlated
16 ZNF610 8 28.9 Moderately correlated
17 ZNF85 8 28.9 Moderately correlated
18 ZKSCAN1 7 160.0 Weakly correlated
19 ZNF175 7 94.0 Weakly correlated
20 ZNF320 7 28.9 Moderately correlated
21 ZNF8 7 99.0 Weakly correlated
22 ZFP69B 6 99.0 Weakly correlated
23 ZNF140 6 99.0 Weakly correlated
24 ZNF18 6 160.0 Weakly correlated
25 ZNF317 6 99.0 Weakly correlated
26 ZNF528 6 43.0 Highly correlated
27 ZNF549 6 87.0 Weakly correlated
28 ZNF589 6 28.9 Moderately correlated
29 ZNF792 6 94.0 Weakly correlated
30 ZIM3 5 87.0 Weakly correlated
31 ZKSCAN8 5 160.0 Weakly correlated
32 ZNF141 5 43.0 Highly correlated
33 ZNF197 5 99.0 Weakly correlated
34 ZNF28 5 28.9 Moderately correlated
35 ZNF394 5 99.0 Weakly correlated
36 ZNF485 5 94.0 Weakly correlated
37 ZNF679 5 28.9 Moderately correlated
38 ZNF701 5 28.9 Moderately correlated
39 ZNF100 4 28.9 Moderately correlated
40 ZNF274 4 99.0 Weakly correlated
41 ZNF419 4 28.9 Moderately correlated
42 ZNF425 4 94.0 Weakly correlated
43 ZNF554 4 99.0 Weakly correlated
44 ZNF558 4 99.0 Weakly correlated
45 ZNF582 4 99.0 Weakly correlated
46 ZNF816 4 28.9 Moderately correlated
47 ZKSCAN5 3 160.0 Weakly correlated
48 ZNF251 3 94.0 Weakly correlated
49 ZNF257 3 0.0 Weakly correlated
50 ZNF418 3 43.0 Highly correlated
51 ZNF483 3 99.0 Weakly correlated
52 ZNF490 3 43.0 Highly correlated
53 ZNF534 3 19.6 Weakly correlated
54 ZNF730 3 19.6 Weakly correlated
55 ZNF778 3 74.0 Weakly correlated
56 ZFP69 2 99.0 Weakly correlated
57 ZNF124 2 43.0 Highly correlated
58 ZNF182 2 99.0 Weakly correlated
59 ZNF202 2 160.0 Weakly correlated
60 ZNF211 2 94.0 Weakly correlated
61 ZNF264 2 99.0 Weakly correlated
62 ZNF273 2 28.9 Moderately correlated
63 ZNF282 2 319.0 Weakly correlated
64 ZNF30 2 94.0 Weakly correlated
65 ZNF350 2 99.0 Weakly correlated
66 ZNF354A 2 99.0 Weakly correlated
67 ZNF41 2 99.0 Weakly correlated
68 ZNF454 2 99.0 Weakly correlated
69 ZNF484 2 99.0 Weakly correlated
70 ZNF506 2 28.9 Moderately correlated
71 ZNF530 2 28.9 Moderately correlated
72 ZNF571 2 99.0 Weakly correlated
73 ZNF573 2 94.0 Weakly correlated
74 ZNF57 2 28.9 Moderately correlated
75 ZNF584 2 99.0 Weakly correlated
76 ZNF585A 2 99.0 Weakly correlated
77 ZNF585B 2 99.0 Weakly correlated
78 ZNF586 2 43.0 Highly correlated
79 ZNF605 2 99.0 Weakly correlated
80 ZNF607 2 43.0 Highly correlated
81 ZNF626 2 0.0 Weakly correlated
82 ZNF641 2 99.0 Weakly correlated
83 ZNF682 2 28.9 Moderately correlated
84 ZNF707 2 74.0 Weakly correlated
85 ZNF780A 2 43.0 Highly correlated
86 RBAK 1 99.0 Weakly correlated
87 ZFP28 1 99.0 Weakly correlated
88 ZFP30 1 99.0 Weakly correlated
89 ZFP90 1 99.0 Weakly correlated
90 ZIM2 1 0.0 Weakly correlated
91 ZKSCAN2 1 180.0 Weakly correlated
92 ZNF114 1 28.9 Moderately correlated
93 ZNF133 1 99.0 Weakly correlated
94 ZNF135 1 94.0 Weakly correlated
95 ZNF136 1 74.0 Weakly correlated
96 ZNF160 1 74.0 Weakly correlated
97 ZNF169 1 94.0 Weakly correlated
98 ZNF180 1 99.0 Weakly correlated
99 ZNF181 1 94.0 Weakly correlated
100 ZNF189 1 99.0 Weakly correlated
101 ZNF214 1 99.0 Weakly correlated
102 ZNF222 1 43.0 Highly correlated
103 ZNF225 1 74.0 Weakly correlated
104 ZNF248 1 99.0 Weakly correlated
105 ZNF254 1 43.0 Highly correlated
106 ZNF26 1 99.0 Weakly correlated
107 ZNF284 1 43.0 Highly correlated
108 ZNF287 1 99.0 Weakly correlated
109 ZNF334 1 99.0 Weakly correlated
110 ZNF337 1 43.0 Highly correlated
111 ZNF33A 1 99.0 Weakly correlated
112 ZNF33B 1 99.0 Weakly correlated
113 ZNF343 1 74.0 Weakly correlated
114 ZNF34 1 99.0 Weakly correlated
115 ZNF354C 1 99.0 Weakly correlated
116 ZNF37A 1 99.0 Weakly correlated
117 ZNF417 1 28.9 Moderately correlated
118 ZNF429 1 28.9 Moderately correlated
119 ZNF430 1 19.6 Weakly correlated
120 ZNF431 1 28.9 Moderately correlated
121 ZNF432 1 99.0 Weakly correlated
122 ZNF436 1 180.0 Weakly correlated
123 ZNF439 1 8.6 Weakly correlated
124 ZNF442 1 43.0 Highly correlated
125 ZNF445 1 99.0 Weakly correlated
126 ZNF44 1 43.0 Highly correlated
127 ZNF45 1 99.0 Weakly correlated
128 ZNF460 1 74.0 Weakly correlated
129 ZNF468 1 28.9 Moderately correlated
130 ZNF519 1 19.6 Weakly correlated
131 ZNF527 1 99.0 Weakly correlated
132 ZNF548 1 94.0 Weakly correlated
133 ZNF550 1 94.0 Weakly correlated
134 ZNF557 1 15.2 Weakly correlated
135 ZNF561 1 43.0 Highly correlated
136 ZNF562 1 28.9 Moderately correlated
137 ZNF563 1 28.9 Moderately correlated
138 ZNF596 1 94.0 Weakly correlated
139 ZNF611 1 19.6 Weakly correlated
140 ZNF615 1 99.0 Weakly correlated
141 ZNF616 1 43.0 Highly correlated
142 ZNF627 1 74.0 Weakly correlated
143 ZNF649 1 28.9 Moderately correlated
144 ZNF669 1 43.0 Highly correlated
145 ZNF671 1 94.0 Weakly correlated
146 ZNF674 1 99.0 Weakly correlated
147 ZNF684 1 99.0 Weakly correlated
148 ZNF695 1 28.9 Moderately correlated
149 ZNF705B 1 28.9 Moderately correlated
150 ZNF705D 1 28.9 Moderately correlated
151 ZNF716 1 19.6 Weakly correlated
152 ZNF735 1 28.9 Moderately correlated
153 ZNF75D 1 94.0 Weakly correlated
154 ZNF765 1 8.6 Weakly correlated
155 ZNF782 1 99.0 Weakly correlated
156 ZNF786 1 99.0 Weakly correlated
157 ZNF791 1 87.0 Weakly correlated
158 ZNF799 1 43.0 Highly correlated
159 ZNF7 1 99.0 Weakly correlated
160 ZNF808 1 19.6 Weakly correlated
161 ZNF81 1 99.0 Weakly correlated
162 ZNF823 1 43.0 Highly correlated
163 ZNF845 1 28.9 Moderately correlated
164 ZNF846 1 74.0 Weakly correlated
165 ZNF84 1 99.0 Weakly correlated
166 ZNF860 1 0.0 Weakly correlated
167 ZNF879 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 26 15.2 Weakly correlated
2 ZNF793 12 99.0 Weakly correlated
3 ZNF43 11 43.0 Highly correlated
4 ZNF680 8 28.9 Moderately correlated
5 ZNF479 7 6.4 Weakly correlated
6 ZNF85 6 28.9 Moderately correlated
7 ZNF141 4 43.0 Highly correlated
8 ZKSCAN5 3 160.0 Weakly correlated
9 ZNF28 3 28.9 Moderately correlated
10 ZNF485 2 94.0 Weakly correlated
11 ZNF320 2 28.9 Moderately correlated
12 ZNF766 2 43.0 Highly correlated
13 ZNF701 2 28.9 Moderately correlated
14 ZNF382 2 99.0 Weakly correlated
15 ZNF547 2 74.0 Weakly correlated
16 ZNF528 2 43.0 Highly correlated
17 ZFP69 2 99.0 Weakly correlated
18 ZFP37 2 99.0 Weakly correlated
19 ZNF816 2 28.9 Moderately correlated
20 ZIM3 2 87.0 Weakly correlated
21 ZNF101 1 43.0 Highly correlated
22 ZNF554 1 99.0 Weakly correlated
23 ZNF197 1 99.0 Weakly correlated
24 ZNF674 1 99.0 Weakly correlated
25 ZNF792 1 94.0 Weakly correlated
26 ZKSCAN1 1 160.0 Weakly correlated
27 ZNF354A 1 99.0 Weakly correlated
28 ZNF100 1 28.9 Moderately correlated
29 ZNF735 1 28.9 Moderately correlated
30 ZNF679 1 28.9 Moderately correlated
31 ZNF589 1 28.9 Moderately correlated
32 ZNF175 1 94.0 Weakly correlated
33 ZNF534 1 19.6 Weakly correlated
34 ZNF263 1 180.0 Weakly correlated
35 ZNF610 1 28.9 Moderately correlated
36 ZNF765 1 8.6 Weakly correlated
37 ZNF705D 1 28.9 Moderately correlated
38 ZNF596 1 94.0 Weakly correlated
39 ZNF584 1 99.0 Weakly correlated
40 ZNF582 1 99.0 Weakly correlated
41 ZNF707 1 74.0 Weakly correlated
42 ZNF2 1 99.0 Weakly correlated
43 ZNF274 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF479 6.4 Weakly correlated
2 ZNF680 28.9 Moderately correlated
3 ZNF793 99.0 Weakly correlated
4 ZNF85 28.9 Moderately correlated