ZRdb KZFP & Repeats
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LTR_MER4E1

  • Name
    MER4E1
  • Repbase
    MER4E1
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000805
Description :

MER4E1 LTR is variant of MER4E. Note that MER stands for MEdiumReiteration frequency interspersed repeat. As such, MERs as a group area grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaggactaagctctgatttttttttatcttgcccaaattcctatctaaggggtctggggagtcatgccctacaaaccataaattctcatcagatgggttttatttaaccctatatatcgtgacttactttccaacctgactctggcataacattacgagacaaggaagaaaatcaaaatattttaccccaaaacatgtttctttgccatattttgaaatggccctgcaaagctgtcctttgtgggggaaaatttgcatctgtaaagaatctctattaacatagctagatctttttcttccaggccctcccaatcctgaagagattaactaagagtctagcaccttttaaaggtctgaataggaaacatttgtcatctattgtctctaagggcagccactataagacttcaaaagaaccttggtctccacaatcttttatcttaacctgaacatttcctttctatcgatcccaggtctttagacaaactcaaccaattgtcaaccagaaaatgtttaaatttacctatagcctggaagcccccactccgcccccgctttgagttgtcccgcctttctggaccaaaccaatgtatttcttaaatgtatttgattgatgtctcatgcctccctaaaatgtataaaaccaagctgcgccccgaccaccttgggcacatgttctcaggacctcctgagggctgtgtcacgggccatggtcactcatatttggctcagaataaatctcttcaaatattttacagagtttgactcttttcgtcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF679 60 28.9 Weakly correlated
2 ZNF558 48 99.0 Weakly correlated
3 ZNF534 38 19.6 Weakly correlated
4 ZNF766 22 43.0 Weakly correlated
5 ZNF705B 11 28.9 Weakly correlated
6 ZNF382 9 99.0 Weakly correlated
7 ZNF680 9 28.9 Weakly correlated
8 ZNF705D 7 28.9 Weakly correlated
9 ZKSCAN1 6 160.0 Weakly correlated
10 ZNF793 5 99.0 Weakly correlated
11 ZNF394 5 99.0 Weakly correlated
12 ZNF695 5 28.9 Weakly correlated
13 ZNF263 4 180.0 Weakly correlated
14 ZNF92 3 28.9 Weakly correlated
15 ZNF479 3 6.4 Weakly correlated
16 ZNF441 3 43.0 Weakly correlated
17 ZNF723 3 15.2 Weakly correlated
18 ZNF735 3 28.9 Weakly correlated
19 ZNF84 3 99.0 Weakly correlated
20 ZNF610 2 28.9 Weakly correlated
21 ZNF589 2 28.9 Weakly correlated
22 ZNF700 2 28.9 Weakly correlated
23 ZNF765 2 8.6 Weakly correlated
24 ZNF506 2 28.9 Weakly correlated
25 ZNF528 2 43.0 Weakly correlated
26 ZNF490 2 43.0 Weakly correlated
27 ZNF486 2 8.6 Weakly correlated
28 ZNF429 2 28.9 Weakly correlated
29 ZNF101 2 43.0 Weakly correlated
30 ZNF18 2 160.0 Weakly correlated
31 ZNF2 2 99.0 Weakly correlated
32 ZNF274 2 99.0 Weakly correlated
33 ZFP69B 1 99.0 Weakly correlated
34 ZNF878 1 43.0 Weakly correlated
35 ZKSCAN8 1 160.0 Weakly correlated
36 ZNF823 1 43.0 Weakly correlated
37 ZNF789 1 99.0 Weakly correlated
38 ZNF140 1 99.0 Weakly correlated
39 ZNF160 1 74.0 Highly correlated
40 ZNF175 1 94.0 Weakly correlated
41 ZNF202 1 160.0 Weakly correlated
42 ZNF251 1 94.0 Weakly correlated
43 ZNF701 1 28.9 Weakly correlated
44 ZNF257 1 0.0 Weakly correlated
45 ZNF317 1 99.0 Weakly correlated
46 ZNF320 1 28.9 Weakly correlated
47 ZNF334 1 99.0 Weakly correlated
48 ZNF567 1 99.0 Weakly correlated
49 ZNF563 1 28.9 Weakly correlated
50 ZNF347 1 43.0 Weakly correlated
51 ZNF554 1 99.0 Weakly correlated
52 ZNF547 1 74.0 Highly correlated
53 ZNF485 1 94.0 Weakly correlated
54 ZNF519 1 19.6 Weakly correlated
55 ZFP37 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF558 31 99.0 Weakly correlated
2 ZNF534 27 19.6 Weakly correlated
3 ZNF766 10 43.0 Weakly correlated
4 ZNF705B 3 28.9 Weakly correlated
5 ZNF705D 2 28.9 Weakly correlated
6 ZNF680 2 28.9 Weakly correlated
7 ZNF479 2 6.4 Weakly correlated
8 ZNF589 2 28.9 Weakly correlated
9 ZNF723 1 15.2 Weakly correlated
10 ZNF793 1 99.0 Weakly correlated
11 ZNF84 1 99.0 Weakly correlated
12 ZNF101 1 43.0 Weakly correlated
13 ZNF695 1 28.9 Weakly correlated
14 ZNF506 1 28.9 Weakly correlated
15 ZNF528 1 43.0 Weakly correlated
16 ZNF485 1 94.0 Weakly correlated
17 ZNF140 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF534 19.6 Weakly correlated
2 ZNF558 99.0 Weakly correlated
3 ZNF766 43.0 Weakly correlated