ZRdb KZFP & Repeats
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LTR_MER4D1

  • Name
    MER4D1
  • Repbase
    MER4D1
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000803
Description :

MER4D1 LTR is a ~90% identical variant of MER4D, which itself is a ~192bp insertion variant with respect to MER4B. Note that MER stands forMEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaaaccaaaaataaaattctaagccccccaaccgactgaatggacccctcctctcggccaagggcattccaaagtaaacctgaaaaactagttcaggccatgatgggaagggggggtcggacatgcctcattataccctcctccctttggaattcaggcacaactgaccagcattaacattaaaacagagatcttaagactgacaaaacagactctttgtagcaataagataccaaattccaacctgactctagtatagcatcacatgacagatagcaggccctgaaagaaatcgaagtattttaccccaaaatatatttctttgacatattttgaaatggccctgcaaagctgtctcttgtggggaaaatctacattctgtagagaatccccttccctttccaggtctttttcctgatccaggagagaattaactaagagtctggcacctttttaagtctgataagaaacatttacaatctattctctctgaagcctgctacctggaggcttcatctgcatgataagaaccttggtctccacaaccccttatcttaacccagacactcctttctattgattccaggtctttagataataactnaactctttcaaccaattgccaatcagaaaatctttgaatccaccgtatgacctggaagcccccccctccacttcgagttgtcccgcctttccggaccgaaccaatgtacatcttacatgtattgattgatgtcttatgtctccctaaaatgtataaaaccaagctgtagcccgaccaccttgggcacatgttctcaggatctcctggggctgtgtcacgggccatggtcactcatatttggctcagaataaatctcttcaaatattttacagagtttgactcttttcgtcgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 57 43.0 Weakly correlated
2 ZNF695 35 28.9 Weakly correlated
3 ZNF382 26 99.0 Weakly correlated
4 ZNF701 17 28.9 Weakly correlated
5 ZNF589 14 28.9 Weakly correlated
6 ZNF584 13 99.0 Weakly correlated
7 ZNF394 13 99.0 Weakly correlated
8 ZNF175 12 94.0 Weakly correlated
9 ZNF317 11 99.0 Weakly correlated
10 ZNF263 11 180.0 Weakly correlated
11 ZFP37 10 99.0 Weakly correlated
12 ZNF534 10 19.6 Weakly correlated
13 ZNF679 10 28.9 Weakly correlated
14 ZNF197 9 99.0 Weakly correlated
15 ZNF680 9 28.9 Weakly correlated
16 ZNF101 9 43.0 Weakly correlated
17 ZNF2 8 99.0 Weakly correlated
18 ZNF479 7 6.4 Weakly correlated
19 ZNF723 7 15.2 Weakly correlated
20 ZIM3 7 87.0 Weakly correlated
21 ZNF705B 6 28.9 Weakly correlated
22 ZNF558 6 99.0 Weakly correlated
23 ZNF682 5 28.9 Weakly correlated
24 ZKSCAN8 5 160.0 Weakly correlated
25 ZKSCAN1 5 160.0 Weakly correlated
26 ZNF705D 4 28.9 Weakly correlated
27 ZNF528 4 43.0 Weakly correlated
28 ZNF75D 4 94.0 Weakly correlated
29 ZNF324 4 99.0 Weakly correlated
30 ZFP69B 4 99.0 Weakly correlated
31 ZNF441 3 43.0 Weakly correlated
32 ZNF506 3 28.9 Weakly correlated
33 ZNF331 3 94.0 Weakly correlated
34 ZNF320 3 28.9 Weakly correlated
35 ZNF610 3 28.9 Weakly correlated
36 ZNF251 3 94.0 Weakly correlated
37 ZNF18 3 160.0 Weakly correlated
38 ZNF735 3 28.9 Weakly correlated
39 ZNF554 2 99.0 Weakly correlated
40 ZNF792 2 94.0 Weakly correlated
41 ZNF823 2 43.0 Weakly correlated
42 ZNF124 2 43.0 Weakly correlated
43 ZNF284 2 43.0 Weakly correlated
44 ZNF28 2 28.9 Weakly correlated
45 ZNF140 2 99.0 Weakly correlated
46 ZNF133 2 99.0 Weakly correlated
47 ZKSCAN5 2 160.0 Weakly correlated
48 ZNF440 2 28.9 Weakly correlated
49 ZNF786 1 99.0 Weakly correlated
50 ZFP28 1 99.0 Weakly correlated
51 ZNF100 1 28.9 Weakly correlated
52 ZNF287 1 99.0 Weakly correlated
53 ZNF707 1 74.0 Highly correlated
54 ZNF793 1 99.0 Weakly correlated
55 ZNF182 1 99.0 Weakly correlated
56 ZNF189 1 99.0 Weakly correlated
57 ZNF799 1 43.0 Weakly correlated
58 ZNF257 1 0.0 Weakly correlated
59 RBAK 1 99.0 Weakly correlated
60 ZNF681 1 28.9 Weakly correlated
61 ZNF485 1 94.0 Weakly correlated
62 ZNF641 1 99.0 Weakly correlated
63 ZNF614 1 99.0 Weakly correlated
64 ZNF304 1 99.0 Weakly correlated
65 ZNF605 1 99.0 Weakly correlated
66 ZNF597 1 94.0 Weakly correlated
67 ZNF334 1 99.0 Weakly correlated
68 ZNF33A 1 99.0 Weakly correlated
69 ZNF420 1 94.0 Weakly correlated
70 ZNF429 1 28.9 Weakly correlated
71 ZNF547 1 74.0 Highly correlated
72 ZNF530 1 28.9 Weakly correlated
73 ZNF471 1 94.0 Weakly correlated
74 ZNF480 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 17 43.0 Weakly correlated
2 ZNF695 5 28.9 Weakly correlated
3 ZNF534 5 19.6 Weakly correlated
4 ZNF317 4 99.0 Weakly correlated
5 ZNF723 3 15.2 Weakly correlated
6 ZIM3 3 87.0 Weakly correlated
7 ZNF320 2 28.9 Weakly correlated
8 ZNF75D 2 94.0 Weakly correlated
9 ZNF263 2 180.0 Weakly correlated
10 ZNF440 2 28.9 Weakly correlated
11 ZNF701 2 28.9 Weakly correlated
12 ZNF197 2 99.0 Weakly correlated
13 ZNF479 2 6.4 Weakly correlated
14 ZNF792 2 94.0 Weakly correlated
15 ZNF679 2 28.9 Weakly correlated
16 ZNF589 2 28.9 Weakly correlated
17 ZNF287 1 99.0 Weakly correlated
18 ZNF284 1 43.0 Weakly correlated
19 ZNF175 1 94.0 Weakly correlated
20 ZNF705D 1 28.9 Weakly correlated
21 ZNF597 1 94.0 Weakly correlated
22 ZNF735 1 28.9 Weakly correlated
23 ZNF506 1 28.9 Weakly correlated
24 ZNF324 1 99.0 Weakly correlated
25 ZNF584 1 99.0 Weakly correlated
26 ZNF528 1 43.0 Weakly correlated
27 ZNF101 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats