ZRdb KZFP & Repeats
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LTR_MER4D

  • Name
    MER4D
  • Repbase
    MER4D_LTR
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000801
Description :

MER4D is a MER4 variant characterized by a 192 bp insertion betweenroughly positions 191-193 of MER4B. Originally, MER4D contained achimaeric 5' end. Note that MER stands for MEdium Reiteration frequencyinterspersed repeat. As such, MERs as a group are a grab bag of DNAtransposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaaaccaaaaataaaattctaagccccccaaccgactgaatggacccctcctctcggccaaggggatcccaaagaaacctgaaaaactagttcaggccatgacgggaaggggggtcggacacgcctcgttataccctcctccctttggagtttaggcacaactgaccagcattaacattaaaatagagatcntaagactgacaaaacagactctttgtagcaataagataccaaattccaacctgactctggtatagcatcacatgacagatagcaggccctgaaggaaatcaaagtattttaccccaaaatatatttctttgacatattttgaaatggccctgcaaagccgtctcttgtgggggaaatttgcattctgtagagaatctccttccctttccaggtcttttccngatccaggagagatttaactaagagtctgacaccttttaaggtccganaagagacatttaccatctattctctctgaagcctgctacctggaggcttcatctacataacaagaaccttggcttccacaaccccccttatcttaactcaagcatttctttctgctgacttcaagtctttagacaaagcttaactctttcaaccaattgccaatcagaaaatctttgaatccacctatgacctgnaagcccccgcttcgagatgtcccgcctttccgggccgaaccaatgtataccttacatgtattgatttatgtctttgcctgtaacttctgtctccctaaaatgtataaaaccaagctgtaacccgaccacctcgggcacacgttctcaggacctcctgaggctgtgtcncgggccatggtcactcatatttggctcagaataaacctctttaaatattttacagagtttggcttttttcgtcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 112 43.0 Weakly correlated
2 ZNF695 60 28.9 Weakly correlated
3 ZNF382 46 99.0 Weakly correlated
4 ZNF723 25 15.2 Weakly correlated
5 ZNF701 18 28.9 Weakly correlated
6 ZFP37 16 99.0 Weakly correlated
7 ZNF394 16 99.0 Weakly correlated
8 ZNF679 11 28.9 Weakly correlated
9 ZFP57 10 87.0 Weakly correlated
10 ZNF317 10 99.0 Weakly correlated
11 ZNF324 9 99.0 Weakly correlated
12 ZNF479 9 6.4 Weakly correlated
13 ZNF101 9 43.0 Weakly correlated
14 ZNF589 8 28.9 Weakly correlated
15 ZNF554 8 99.0 Weakly correlated
16 ZNF558 7 99.0 Weakly correlated
17 ZNF18 7 160.0 Weakly correlated
18 ZIM3 7 87.0 Weakly correlated
19 ZNF2 7 99.0 Weakly correlated
20 ZNF197 6 99.0 Weakly correlated
21 ZNF549 6 87.0 Weakly correlated
22 ZNF680 6 28.9 Weakly correlated
23 ZKSCAN8 6 160.0 Weakly correlated
24 ZNF707 6 74.0 Highly correlated
25 ZNF610 5 28.9 Weakly correlated
26 ZNF584 5 99.0 Weakly correlated
27 ZNF534 5 19.6 Weakly correlated
28 ZKSCAN1 5 160.0 Weakly correlated
29 ZNF263 5 180.0 Weakly correlated
30 ZNF486 4 8.6 Weakly correlated
31 ZNF140 4 99.0 Weakly correlated
32 ZNF175 4 94.0 Weakly correlated
33 ZFP69B 4 99.0 Weakly correlated
34 ZNF75D 4 94.0 Weakly correlated
35 ZNF485 4 94.0 Weakly correlated
36 ZNF133 4 99.0 Weakly correlated
37 ZNF28 3 28.9 Weakly correlated
38 ZNF264 3 99.0 Weakly correlated
39 ZNF793 3 99.0 Weakly correlated
40 ZNF441 2 43.0 Weakly correlated
41 ZNF705B 2 28.9 Weakly correlated
42 ZNF136 2 74.0 Highly correlated
43 ZNF823 2 43.0 Weakly correlated
44 ZNF528 2 43.0 Weakly correlated
45 ZNF257 2 0.0 Weakly correlated
46 ZFP28 2 99.0 Weakly correlated
47 ZNF251 2 94.0 Weakly correlated
48 ZNF792 2 94.0 Weakly correlated
49 ZNF182 2 99.0 Weakly correlated
50 ZNF75A 1 94.0 Weakly correlated
51 ZNF641 1 99.0 Weakly correlated
52 ZNF675 1 8.6 Weakly correlated
53 ZNF736 1 43.0 Weakly correlated
54 ZNF92 1 28.9 Weakly correlated
55 ZNF705D 1 28.9 Weakly correlated
56 ZNF43 1 43.0 Weakly correlated
57 ZNF124 1 43.0 Weakly correlated
58 ZNF135 1 94.0 Weakly correlated
59 ZNF17 1 69.0 Moderately correlated
60 ZNF202 1 160.0 Weakly correlated
61 ZNF274 1 99.0 Weakly correlated
62 ZNF334 1 99.0 Weakly correlated
63 ZNF347 1 43.0 Weakly correlated
64 ZNF417 1 28.9 Weakly correlated
65 ZNF425 1 94.0 Weakly correlated
66 ZNF605 1 99.0 Weakly correlated
67 ZNF44 1 43.0 Weakly correlated
68 ZNF468 1 28.9 Weakly correlated
69 ZNF471 1 94.0 Weakly correlated
70 ZNF490 1 43.0 Weakly correlated
71 ZNF530 1 28.9 Weakly correlated
72 ZNF547 1 74.0 Highly correlated
73 ZNF563 1 28.9 Weakly correlated
74 ZNF587 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 70 43.0 Weakly correlated
2 ZNF723 22 15.2 Weakly correlated
3 ZNF695 8 28.9 Weakly correlated
4 ZFP57 5 87.0 Weakly correlated
5 ZNF197 4 99.0 Weakly correlated
6 ZNF534 4 19.6 Weakly correlated
7 ZNF479 4 6.4 Weakly correlated
8 ZIM3 3 87.0 Weakly correlated
9 ZNF175 3 94.0 Weakly correlated
10 ZNF589 3 28.9 Weakly correlated
11 ZNF584 2 99.0 Weakly correlated
12 ZNF75D 2 94.0 Weakly correlated
13 ZNF485 2 94.0 Weakly correlated
14 ZNF792 2 94.0 Weakly correlated
15 ZNF382 2 99.0 Weakly correlated
16 ZNF101 2 43.0 Weakly correlated
17 ZNF701 1 28.9 Weakly correlated
18 ZNF530 1 28.9 Weakly correlated
19 ZNF264 1 99.0 Weakly correlated
20 ZNF263 1 180.0 Weakly correlated
21 ZNF257 1 0.0 Weakly correlated
22 ZNF705D 1 28.9 Weakly correlated
23 ZNF558 1 99.0 Weakly correlated
24 ZNF707 1 74.0 Highly correlated
25 ZNF549 1 87.0 Weakly correlated
26 ZNF43 1 43.0 Weakly correlated
27 ZNF705B 1 28.9 Weakly correlated
28 ZNF468 1 28.9 Weakly correlated
29 ZNF44 1 43.0 Weakly correlated
30 ZNF202 1 160.0 Weakly correlated
31 ZNF347 1 43.0 Weakly correlated
32 ZNF324 1 99.0 Weakly correlated
33 ZNF28 1 28.9 Weakly correlated
34 ZNF18 1 160.0 Weakly correlated
35 ZNF317 1 99.0 Weakly correlated
36 ZNF2 1 99.0 Weakly correlated
37 ZNF140 1 99.0 Weakly correlated
38 ZNF133 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF723 15.2 Weakly correlated