ZRdb KZFP & Repeats
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LTR_MER4CL34

  • Name
    MER4CL34
  • Repbase
    MER4CL34
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000800
Description :

This LTR combines features of both MER4C and LTR34. Note that MER standsfor MEdium Reiteration frequency interspersed repeat. As such, MERs as agroup are a grab bag of DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaaagaaaataaaatctcgggaccccaaactcactatgccaaagggaaaagttaagcttgggaactgagtcacgcaaaaactgccttccttttgttcccaaacagatagctgtaatttcacaaccctgtgtcatagcctcatncataagccaggttcccacaangatagaaggccacatatctccccaggtggcctccctcacaanttgctcacaaggaaattccttgtgggccccnaaatctttcaggatacatatcccccctataaactagccctaaaacagagttctgttgaatctcaccctgacaatgtaaattaacagcttatcttcacaggtacgggacaaggacaagactagaaatcatccctccgcccaccctgagacgaatgcatatttgacttcttcctctactccctcttttcacatgtttatcttatgtaaaatgcagatttactgagcgcgagacgaatgcataattgacttttcctctaccccctcctttcacatgtaaaatgtggattcantgagcgctaatcaaagcctcacaagaatgtaaccacttgcctcattgcctacccntccttcttttctttcctctttcccctcctgcccgctctttcccctttaaatattgaagtccccaaaaccctctttggaaaaagcacaggtcacagatnctnctgtgacttgtgttttttcccgggcgcgtcctcaaccttggcaaaataaacctctaatcgattgagacctgcctcagtca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 335 99.0 Weakly correlated
2 ZNF766 280 43.0 Highly correlated
3 ZNF680 45 28.9 Moderately correlated
4 ZNF534 13 19.6 Weakly correlated
5 ZKSCAN8 12 160.0 Weakly correlated
6 ZNF705B 12 28.9 Moderately correlated
7 ZNF479 10 6.4 Weakly correlated
8 ZIM3 10 87.0 Weakly correlated
9 ZNF394 10 99.0 Weakly correlated
10 ZNF705D 10 28.9 Moderately correlated
11 ZNF257 9 0.0 Weakly correlated
12 ZNF28 9 28.9 Moderately correlated
13 ZNF175 9 94.0 Weakly correlated
14 ZNF589 9 28.9 Moderately correlated
15 ZNF263 8 180.0 Weakly correlated
16 ZNF584 8 99.0 Weakly correlated
17 ZNF18 7 160.0 Weakly correlated
18 ZKSCAN1 6 160.0 Weakly correlated
19 ZNF101 6 43.0 Highly correlated
20 ZNF679 6 28.9 Moderately correlated
21 ZNF197 5 99.0 Weakly correlated
22 ZNF2 5 99.0 Weakly correlated
23 ZNF317 5 99.0 Weakly correlated
24 ZNF324 5 99.0 Weakly correlated
25 ZNF558 4 99.0 Weakly correlated
26 ZFP37 4 99.0 Weakly correlated
27 ZNF793 4 99.0 Weakly correlated
28 ZNF554 4 99.0 Weakly correlated
29 ZNF441 3 43.0 Highly correlated
30 ZFP69B 3 99.0 Weakly correlated
31 ZNF549 3 87.0 Weakly correlated
32 ZNF610 3 28.9 Moderately correlated
33 ZNF140 3 99.0 Weakly correlated
34 ZNF274 3 99.0 Weakly correlated
35 ZNF429 2 28.9 Moderately correlated
36 ZNF641 2 99.0 Weakly correlated
37 ZNF141 2 43.0 Highly correlated
38 ZNF816 2 28.9 Moderately correlated
39 ZNF251 2 94.0 Weakly correlated
40 ZNF273 2 28.9 Moderately correlated
41 ZNF547 2 74.0 Weakly correlated
42 ZNF320 2 28.9 Moderately correlated
43 ZNF506 2 28.9 Moderately correlated
44 ZNF347 2 43.0 Highly correlated
45 ZNF723 2 15.2 Weakly correlated
46 ZNF701 1 28.9 Moderately correlated
47 ZNF75D 1 94.0 Weakly correlated
48 ZNF845 1 28.9 Moderately correlated
49 ZNF878 1 43.0 Highly correlated
50 ZNF597 1 94.0 Weakly correlated
51 ZNF585B 1 99.0 Weakly correlated
52 ZNF528 1 43.0 Highly correlated
53 ZNF519 1 19.6 Weakly correlated
54 ZNF483 1 99.0 Weakly correlated
55 ZNF468 1 28.9 Moderately correlated
56 ZNF436 1 180.0 Weakly correlated
57 ZNF425 1 94.0 Weakly correlated
58 ZNF30 1 94.0 Weakly correlated
59 ZNF284 1 43.0 Highly correlated
60 ZNF224 1 69.0 Weakly correlated
61 ZNF136 1 74.0 Weakly correlated
62 ZNF12 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 134 43.0 Highly correlated
2 ZNF382 19 99.0 Weakly correlated
3 ZNF479 10 6.4 Weakly correlated
4 ZNF257 6 0.0 Weakly correlated
5 ZNF534 6 19.6 Weakly correlated
6 ZNF589 5 28.9 Moderately correlated
7 ZNF175 4 94.0 Weakly correlated
8 ZIM3 4 87.0 Weakly correlated
9 ZNF584 4 99.0 Weakly correlated
10 ZNF197 3 99.0 Weakly correlated
11 ZNF793 3 99.0 Weakly correlated
12 ZNF705D 3 28.9 Moderately correlated
13 ZNF680 3 28.9 Moderately correlated
14 ZNF141 2 43.0 Highly correlated
15 ZNF101 2 43.0 Highly correlated
16 ZKSCAN1 2 160.0 Weakly correlated
17 ZNF263 2 180.0 Weakly correlated
18 ZNF705B 2 28.9 Moderately correlated
19 ZNF610 1 28.9 Moderately correlated
20 ZNF30 1 94.0 Weakly correlated
21 ZNF816 1 28.9 Moderately correlated
22 ZNF317 1 99.0 Weakly correlated
23 ZNF28 1 28.9 Moderately correlated
24 ZNF251 1 94.0 Weakly correlated
25 ZFP37 1 99.0 Weakly correlated
26 ZNF554 1 99.0 Weakly correlated
27 ZNF483 1 99.0 Weakly correlated
28 ZNF347 1 43.0 Highly correlated
29 ZKSCAN8 1 160.0 Weakly correlated
30 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF479 6.4 Weakly correlated
3 ZNF534 19.6 Weakly correlated