ZRdb KZFP & Repeats
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LTR_MER4C

  • Name
    MER4C
  • Repbase
    MER4C
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000799
Description :

Belongs to MER4-int group. Note that MER stands for MEdium Reiterationfrequency interspersed repeat. As such, MERs as a group are a grab bagof DNA transposons and retrotransposons.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaaaggaaaataaaaactcgggaccccaattcactatgccaaaaggaaaaaattaagctgaaagctgagtcatgcaagaagctgcctttccttttgttcctaagcagatagctacagataaaaggttaaatatctccacaggtagctactctatgttcaccttatcttatgtaaagtgccgatttactgagcgcgagacgaatacataattgactattcccctacctgctccttttctcttgcaacatgtggattcagtaatgtgaccataccctccctctttcccctccagcccgcttttcccctttaaatattgaagccctcaaaatcatctttggagaaaggcacagaccacagatgtttctgtgattccgtgtttntttctcccgggcatgtccttaaccttggcaaaataaacttctaaattgattgagacctgtctcagatactttttggtttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 85 43.0 Weakly correlated
2 ZNF382 49 99.0 Weakly correlated
3 ZNF479 22 6.4 Weakly correlated
4 ZFP69B 21 99.0 Weakly correlated
5 ZNF589 20 28.9 Weakly correlated
6 ZNF394 18 99.0 Weakly correlated
7 ZFP37 18 99.0 Weakly correlated
8 ZNF175 16 94.0 Weakly correlated
9 ZNF197 15 99.0 Weakly correlated
10 ZNF263 14 180.0 Weakly correlated
11 ZKSCAN8 14 160.0 Weakly correlated
12 ZNF680 13 28.9 Weakly correlated
13 ZNF584 9 99.0 Weakly correlated
14 ZNF2 9 99.0 Weakly correlated
15 ZNF705B 8 28.9 Weakly correlated
16 ZNF324 8 99.0 Weakly correlated
17 ZNF558 7 99.0 Weakly correlated
18 ZKSCAN1 6 160.0 Weakly correlated
19 ZNF257 6 0.0 Weakly correlated
20 ZNF534 6 19.6 Weakly correlated
21 ZNF485 5 94.0 Weakly correlated
22 ZNF92 4 28.9 Weakly correlated
23 ZNF554 4 99.0 Weakly correlated
24 ZNF610 4 28.9 Weakly correlated
25 ZNF679 4 28.9 Weakly correlated
26 ZNF705D 4 28.9 Weakly correlated
27 ZNF723 4 15.2 Weakly correlated
28 ZIM3 4 87.0 Weakly correlated
29 ZNF28 3 28.9 Weakly correlated
30 ZNF18 3 160.0 Weakly correlated
31 ZNF331 3 94.0 Weakly correlated
32 ZNF343 2 74.0 Highly correlated
33 ZNF641 2 99.0 Weakly correlated
34 ZNF182 2 99.0 Weakly correlated
35 ZNF75D 2 94.0 Weakly correlated
36 ZNF101 2 43.0 Weakly correlated
37 ZNF563 2 28.9 Weakly correlated
38 ZNF792 2 94.0 Weakly correlated
39 ZNF317 2 99.0 Weakly correlated
40 ZNF528 2 43.0 Weakly correlated
41 ZNF616 1 43.0 Weakly correlated
42 ZNF778 1 74.0 Highly correlated
43 ZNF793 1 99.0 Weakly correlated
44 ZNF823 1 43.0 Weakly correlated
45 ZNF730 1 19.6 Weakly correlated
46 ZNF850 1 28.9 Weakly correlated
47 ZNF707 1 74.0 Highly correlated
48 ZNF8 1 99.0 Weakly correlated
49 ZNF202 1 160.0 Weakly correlated
50 ZNF84 1 99.0 Weakly correlated
51 ZNF701 1 28.9 Weakly correlated
52 ZNF274 1 99.0 Weakly correlated
53 ZNF429 1 28.9 Weakly correlated
54 ZNF436 1 180.0 Weakly correlated
55 ZNF441 1 43.0 Weakly correlated
56 ZNF468 1 28.9 Weakly correlated
57 ZNF486 1 8.6 Weakly correlated
58 ZNF510 1 99.0 Weakly correlated
59 ZNF547 1 74.0 Highly correlated
60 ZNF287 1 99.0 Weakly correlated
61 ZNF214 1 99.0 Weakly correlated
62 ZNF585B 1 99.0 Weakly correlated
63 ZNF273 1 28.9 Weakly correlated
64 ZNF26 1 99.0 Weakly correlated
65 ZNF613 1 99.0 Weakly correlated
66 ZNF383 1 99.0 Weakly correlated
67 ZNF627 1 74.0 Highly correlated
68 ZNF251 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 26 43.0 Weakly correlated
2 ZNF479 21 6.4 Weakly correlated
3 ZNF197 7 99.0 Weakly correlated
4 ZNF589 6 28.9 Weakly correlated
5 ZNF175 5 94.0 Weakly correlated
6 ZNF584 5 99.0 Weakly correlated
7 ZFP37 5 99.0 Weakly correlated
8 ZNF263 3 180.0 Weakly correlated
9 ZNF723 2 15.2 Weakly correlated
10 ZNF680 2 28.9 Weakly correlated
11 ZNF554 2 99.0 Weakly correlated
12 ZNF534 2 19.6 Weakly correlated
13 ZNF2 1 99.0 Weakly correlated
14 ZNF382 1 99.0 Weakly correlated
15 ZNF528 1 43.0 Weakly correlated
16 ZNF793 1 99.0 Weakly correlated
17 ZNF558 1 99.0 Weakly correlated
18 ZNF18 1 160.0 Weakly correlated
19 ZNF585B 1 99.0 Weakly correlated
20 ZNF485 1 94.0 Weakly correlated
21 ZNF383 1 99.0 Weakly correlated
22 ZNF75D 1 94.0 Weakly correlated
23 ZNF563 1 28.9 Weakly correlated
24 ZNF101 1 43.0 Weakly correlated
25 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF197 99.0 Weakly correlated
2 ZNF479 6.4 Weakly correlated
3 ZNF589 28.9 Weakly correlated